Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MRO11_RS01825 Genome accession   NZ_CP095336
Coordinates   418410..418928 (+) Length   172 a.a.
NCBI ID   WP_004396114.1    Uniprot ID   A0AAW8GVB6
Organism   Vibrio metschnikovii strain 19GA03SH07     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 413410..423928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRO11_RS01810 (MRO11_01810) uvrA 413440..416265 (-) 2826 WP_332398097.1 excinuclease ABC subunit UvrA -
  MRO11_RS01815 (MRO11_01815) galU 416410..417279 (-) 870 WP_154169290.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  MRO11_RS01820 (MRO11_01820) qstR 417477..418127 (-) 651 WP_158137756.1 LuxR C-terminal-related transcriptional regulator Regulator
  MRO11_RS01825 (MRO11_01825) ssb 418410..418928 (+) 519 WP_004396114.1 single-stranded DNA-binding protein Machinery gene
  MRO11_RS01830 (MRO11_01830) csrD 419074..421065 (+) 1992 WP_332398098.1 RNase E specificity factor CsrD -
  MRO11_RS01835 (MRO11_01835) - 421072..421722 (+) 651 WP_342639090.1 hypothetical protein -
  MRO11_RS01840 (MRO11_01840) - 421704..422522 (+) 819 WP_342639089.1 hypothetical protein -
  MRO11_RS01845 (MRO11_01845) gspM 422522..423172 (+) 651 WP_004396111.1 type II secretion system protein GspM -
  MRO11_RS01850 (MRO11_01850) - 423165..423482 (+) 318 WP_233268194.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18967.94 Da        Isoelectric Point: 5.2358

>NTDB_id=676418 MRO11_RS01825 WP_004396114.1 418410..418928(+) (ssb) [Vibrio metschnikovii strain 19GA03SH07]
MATRGVNKVILVGNLGADPEVRYMASGAAVANITLATSESWRDKTTGEQRERTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGYNGIMQMLGGRQQGAAPGQGAPQGQQSNWGQPQQPSAQQSPKQSAPQQAQPQYN
EPPMDFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=676418 MRO11_RS01825 WP_004396114.1 418410..418928(+) (ssb) [Vibrio metschnikovii strain 19GA03SH07]
ATGGCAACCCGTGGCGTAAATAAAGTAATTTTGGTCGGTAACTTAGGGGCTGACCCTGAAGTTCGCTATATGGCAAGTGG
TGCTGCGGTAGCAAATATCACTCTGGCAACCTCAGAAAGCTGGCGTGATAAAACCACCGGCGAGCAACGTGAAAGAACGG
AATGGCACCGCGTAGCCTTATATGGCAAACTCGCTGAAGTTGCGGGCGAATATTTACGTAAGGGATCGCAGGTTTATATC
GAAGGTCAATTACAAACGCGTAAATGGCAAGATCAGAGCGGCCAAGATCGTTATACCACGGAAGTTGTGGTGCAAGGTTA
TAATGGCATTATGCAAATGTTGGGTGGTCGTCAGCAAGGTGCAGCGCCTGGACAGGGGGCTCCTCAAGGTCAACAAAGTA
ACTGGGGACAGCCACAACAACCTTCAGCGCAGCAATCACCGAAGCAGTCAGCACCTCAGCAAGCTCAGCCACAATATAAT
GAGCCGCCGATGGATTTTGATGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.921

100

0.843
  ssb Glaesserella parasuis strain SC1401

50.785

100

0.564
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.494
  ssb Neisseria meningitidis MC58

46.893

100

0.483