Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   MRO11_RS01820 Genome accession   NZ_CP095336
Coordinates   417477..418127 (-) Length   216 a.a.
NCBI ID   WP_158137756.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 19GA03SH07     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 412477..423127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRO11_RS01810 (MRO11_01810) uvrA 413440..416265 (-) 2826 WP_332398097.1 excinuclease ABC subunit UvrA -
  MRO11_RS01815 (MRO11_01815) galU 416410..417279 (-) 870 WP_154169290.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  MRO11_RS01820 (MRO11_01820) qstR 417477..418127 (-) 651 WP_158137756.1 LuxR C-terminal-related transcriptional regulator Regulator
  MRO11_RS01825 (MRO11_01825) ssb 418410..418928 (+) 519 WP_004396114.1 single-stranded DNA-binding protein Machinery gene
  MRO11_RS01830 (MRO11_01830) csrD 419074..421065 (+) 1992 WP_332398098.1 RNase E specificity factor CsrD -
  MRO11_RS01835 (MRO11_01835) - 421072..421722 (+) 651 WP_342639090.1 hypothetical protein -
  MRO11_RS01840 (MRO11_01840) - 421704..422522 (+) 819 WP_342639089.1 hypothetical protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25234.04 Da        Isoelectric Point: 10.0663

>NTDB_id=676417 MRO11_RS01820 WP_158137756.1 417477..418127(-) (qstR) [Vibrio metschnikovii strain 19GA03SH07]
MPKSSYARTIYYLTTDVNQSTPSRLQKAFHLLAIPIEKVEPEPLVQQYRHSKHKILLLDYQDHRAIRHRLGPLKLTTHYL
ETILFNVDKRLPTDLLISFGNLKGLFYQTDSAEQLSHGLAQIINGQNWLPRHVSNQLLHHFRYAFHEQHTKATLDLTVRE
IQILRCLQAQASNDDIAKNLFISELTVKSHLYQIYKKLAVKNRAQAISWANHHLFQ

Nucleotide


Download         Length: 651 bp        

>NTDB_id=676417 MRO11_RS01820 WP_158137756.1 417477..418127(-) (qstR) [Vibrio metschnikovii strain 19GA03SH07]
ATGCCCAAATCGAGTTACGCGCGTACCATCTACTATCTGACCACAGACGTAAATCAATCGACTCCGAGTCGGTTACAAAA
AGCATTTCATCTACTCGCGATCCCTATCGAAAAAGTGGAGCCTGAACCGTTAGTACAACAATACCGACACAGTAAACACA
AGATACTGCTGCTCGATTATCAAGATCATCGCGCGATTCGTCATCGACTTGGTCCTTTAAAACTGACCACTCATTATCTT
GAGACGATTCTTTTTAATGTCGATAAACGACTACCGACCGATCTATTAATCAGCTTTGGGAATTTAAAGGGACTCTTTTA
TCAAACCGATAGTGCGGAGCAACTTTCCCATGGCTTGGCGCAGATCATTAATGGCCAAAATTGGTTGCCTCGTCATGTTT
CGAACCAATTATTACATCATTTTCGTTACGCCTTTCATGAGCAACATACCAAAGCCACTCTCGATCTTACGGTTCGAGAA
ATACAGATTTTACGCTGTTTGCAAGCGCAAGCTTCCAACGATGATATTGCGAAGAACTTATTTATCAGCGAACTAACCGT
AAAATCTCATTTGTACCAAATTTATAAAAAGCTCGCGGTAAAAAACCGAGCTCAAGCGATATCTTGGGCCAATCACCATC
TTTTTCAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

60.93

99.537

0.606
  qstR Vibrio parahaemolyticus RIMD 2210633

46.512

99.537

0.463
  qstR Vibrio campbellii strain DS40M4

46.047

99.537

0.458