Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MRK42_RS00980 Genome accession   NZ_CP095328
Coordinates   208093..209607 (-) Length   504 a.a.
NCBI ID   WP_354688761.1    Uniprot ID   A0AAU6T919
Organism   Aeromonas sp. 19NY04SH05-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 203093..214607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRK42_RS00955 (MRK42_00960) - 204325..204960 (-) 636 WP_354688757.1 nicotinamidase -
  MRK42_RS00960 (MRK42_00965) - 205035..205685 (+) 651 WP_026457335.1 DNA mismatch repair protein MutT -
  MRK42_RS00965 (MRK42_00970) - 205682..206158 (+) 477 WP_354688758.1 DUF523 domain-containing protein -
  MRK42_RS00970 (MRK42_00975) - 206113..207069 (-) 957 WP_354688759.1 acyltransferase -
  MRK42_RS00975 (MRK42_00980) - 207076..207975 (-) 900 WP_354688760.1 acyltransferase -
  MRK42_RS00980 (MRK42_00985) comM 208093..209607 (-) 1515 WP_354688761.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MRK42_RS00985 (MRK42_00990) ilvG 209993..211639 (+) 1647 WP_354688762.1 acetolactate synthase 2 catalytic subunit -
  MRK42_RS00990 (MRK42_00995) ilvM 211636..211887 (+) 252 WP_354688763.1 acetolactate synthase 2 small subunit -
  MRK42_RS00995 (MRK42_01000) - 211900..212838 (+) 939 WP_354688764.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54637.55 Da        Isoelectric Point: 7.4493

>NTDB_id=676348 MRK42_RS00980 WP_354688761.1 208093..209607(-) (comM) [Aeromonas sp. 19NY04SH05-1]
MSLAVVYSRASLGVAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQSTESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRERVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPVI
SKEHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=676348 MRK42_RS00980 WP_354688761.1 208093..209607(-) (comM) [Aeromonas sp. 19NY04SH05-1]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCTTAGGTGTCGCGGCCCCGCAAGTCACGGTGGAGGTACACCTCTCCAA
CGGTCTGCCCGCCTTCAACATGGTAGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TTAACGGCAATTTCGAGTTTCCGTCCAAACACATCACGGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGGGGCCGT
TTCGATCTGGCCATCGCCATCGGTATTCTCGCCGCTTCCAAGCAGATACCGGCAAAATACCTGCTCGATCACGAATTTTT
AGGGGAACTGGCCCTGACCGGCGAGATCCGCCCCGTGCTCGGCGTGCTACCCGCCGTGCTCGCCTGCCGCGATGCGGGTC
GCACCCTGCTGGTACCGCGGGAGAACGGCCCCGAGGCCTCGCTGATCCAGGACGCCGAGGTGCGCACCGCCCACCAGCTG
CTGGCCGTCACCGCCTGGCTGGCGGGCCAGTACGAGCTGCCGCTGCCGGATCCCCAGAGCACGGAGAGCCTGCCTGACGT
GCCGGACCTGCAGGACGTGATCGGCCAGTCCCAGGCCAAGCGGGCGCTGGAGATCGCTGCCGCCGGCAGCCACAACCTGC
TGTTCATTGGCCCGCCCGGTACCGGCAAGAGTATGCTGGCCAGCCGCCTGCCCGGCATTCTGCCGCCGCTGAGCGAGCAG
GAGGCGCAGCAAACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCGCGCGCCGGCCACTGGCACCACAGGCCCTATCG
AACGCCCCACCACAGCGCCTCGGCGGTGGCACTGGTGGGCGGTGGCAGTCACCCGCGTCCCGGCGAAATATCCCTGGCCC
ACAACGGGGTGCTGTTCCTCGACGAGCTGCCTGAGTTCGAGCGCAAGGTGCTCGATTCCCTGCGTGAACCGCTGGAGACG
GGGCACATCACCATCAGTCGTGCCGCCCGTCAGGTCGATTTCCCCGCCCGCTTCCAGCTGGTCGGCGCCATGAACCCCAG
CCCTTGCGGCCACTATGGCGACGGCCAGACCCGCTCCAGCCCGGACCAGATCCTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTCCTAGACCGCTTCGACCTGACAGTGGAGGTGCCACTGCTGCCCAAGGGGAGCCTGACCGGTAAGGCGGAGCGGGGG
GAGTCGAGCCAACAGATCCGCGAGCGGGTGCTGGCGGCGCGCGAGCGCATGCTGAGTCGCAATGGCAAGCTCAACAACCT
GCTTGATAGCCGTGAAATCGAAGATATTTGCCGATTATCGCCACAGGATGCCGAATTTCTGGAGAACGCCATCCAGAAGC
TCGGACTCAGCATCCGGGCTTGGCACCGCATCCTGCGGGTATCGCGTACCATCGCCGATCTGGCGGGGCAGCCTGTCATT
AGCAAGGAGCACCTGATCGAGGCGCTCGGCTATCGCGCCATGGACCGCCTGCTCTCCAGATTGCGAAGCGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.546

99.603

0.633
  comM Vibrio campbellii strain DS40M4

62.55

99.603

0.623
  comM Haemophilus influenzae Rd KW20

62.055

100

0.623
  comM Glaesserella parasuis strain SC1401

60.552

100

0.609
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.443

100

0.466