Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MRO13_RS12080 Genome accession   NZ_CP095311
Coordinates   2628918..2629436 (-) Length   172 a.a.
NCBI ID   WP_004396114.1    Uniprot ID   A0AAW8GVB6
Organism   Vibrio metschnikovii strain 20CO01TI02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2623918..2634436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRO13_RS12060 (MRO13_12005) - 2623994..2624188 (-) 195 WP_350939675.1 hypothetical protein -
  MRO13_RS12065 (MRO13_12010) - 2624163..2625371 (-) 1209 WP_096036005.1 IS4 family transposase -
  MRO13_RS12070 (MRO13_12015) - 2625311..2626774 (-) 1464 WP_350939677.1 MSHA biogenesis protein MshI -
  MRO13_RS12075 (MRO13_12020) csrD 2626781..2628772 (-) 1992 WP_170904752.1 RNase E specificity factor CsrD -
  MRO13_RS12080 (MRO13_12025) ssb 2628918..2629436 (-) 519 WP_004396114.1 single-stranded DNA-binding protein Machinery gene
  MRO13_RS12085 (MRO13_12030) qstR 2629719..2630369 (+) 651 WP_158137756.1 LuxR C-terminal-related transcriptional regulator Regulator
  MRO13_RS12090 (MRO13_12035) galU 2630693..2631562 (+) 870 WP_040904714.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18967.94 Da        Isoelectric Point: 5.2358

>NTDB_id=676303 MRO13_RS12080 WP_004396114.1 2628918..2629436(-) (ssb) [Vibrio metschnikovii strain 20CO01TI02]
MATRGVNKVILVGNLGADPEVRYMASGAAVANITLATSESWRDKTTGEQRERTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGYNGIMQMLGGRQQGAAPGQGAPQGQQSNWGQPQQPSAQQSPKQSAPQQAQPQYN
EPPMDFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=676303 MRO13_RS12080 WP_004396114.1 2628918..2629436(-) (ssb) [Vibrio metschnikovii strain 20CO01TI02]
ATGGCAACCCGTGGCGTAAATAAAGTAATTTTGGTCGGTAACTTAGGGGCTGACCCTGAAGTTCGCTATATGGCAAGTGG
TGCTGCGGTAGCAAATATCACTCTGGCAACCTCAGAAAGCTGGCGTGATAAAACCACCGGCGAGCAACGTGAAAGAACAG
AATGGCACCGCGTAGCCTTATATGGCAAACTCGCTGAAGTTGCGGGCGAATATTTACGTAAGGGATCGCAGGTTTATATC
GAAGGTCAATTACAAACGCGTAAATGGCAAGATCAGAGCGGCCAAGATCGTTATACCACGGAAGTTGTGGTGCAAGGTTA
TAATGGCATTATGCAAATGTTGGGTGGTCGTCAGCAAGGTGCAGCGCCTGGACAGGGGGCTCCTCAAGGTCAACAAAGTA
ACTGGGGACAGCCACAACAACCTTCAGCGCAGCAATCACCGAAGCAGTCAGCACCTCAGCAAGCTCAGCCACAATATAAT
GAGCCGCCGATGGATTTTGATGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.921

100

0.843
  ssb Glaesserella parasuis strain SC1401

50.785

100

0.564
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.494
  ssb Neisseria meningitidis MC58

46.893

100

0.483