Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   MRO13_RS12085 Genome accession   NZ_CP095311
Coordinates   2629719..2630369 (+) Length   216 a.a.
NCBI ID   WP_158137756.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 20CO01TI02     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2624719..2635369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRO13_RS12070 (MRO13_12015) - 2625311..2626774 (-) 1464 WP_350939677.1 MSHA biogenesis protein MshI -
  MRO13_RS12075 (MRO13_12020) csrD 2626781..2628772 (-) 1992 WP_170904752.1 RNase E specificity factor CsrD -
  MRO13_RS12080 (MRO13_12025) ssb 2628918..2629436 (-) 519 WP_004396114.1 single-stranded DNA-binding protein Machinery gene
  MRO13_RS12085 (MRO13_12030) qstR 2629719..2630369 (+) 651 WP_158137756.1 LuxR C-terminal-related transcriptional regulator Regulator
  MRO13_RS12090 (MRO13_12035) galU 2630693..2631562 (+) 870 WP_040904714.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  MRO13_RS12095 (MRO13_12040) uvrA 2631707..2634532 (+) 2826 WP_040904715.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25234.04 Da        Isoelectric Point: 10.0663

>NTDB_id=676304 MRO13_RS12085 WP_158137756.1 2629719..2630369(+) (qstR) [Vibrio metschnikovii strain 20CO01TI02]
MPKSSYARTIYYLTTDVNQSTPSRLQKAFHLLAIPIEKVEPEPLVQQYRHSKHKILLLDYQDHRAIRHRLGPLKLTTHYL
ETILFNVDKRLPTDLLISFGNLKGLFYQTDSAEQLSHGLAQIINGQNWLPRHVSNQLLHHFRYAFHEQHTKATLDLTVRE
IQILRCLQAQASNDDIAKNLFISELTVKSHLYQIYKKLAVKNRAQAISWANHHLFQ

Nucleotide


Download         Length: 651 bp        

>NTDB_id=676304 MRO13_RS12085 WP_158137756.1 2629719..2630369(+) (qstR) [Vibrio metschnikovii strain 20CO01TI02]
ATGCCCAAATCGAGTTACGCGCGTACCATCTACTATCTGACCACAGACGTAAATCAATCGACTCCGAGTCGGTTACAAAA
AGCATTTCATCTACTCGCGATCCCTATCGAAAAAGTGGAGCCTGAACCGTTAGTACAACAATACCGACACAGTAAACACA
AGATACTGCTGCTCGATTATCAAGATCATCGCGCGATTCGTCATCGACTTGGTCCTTTAAAACTGACCACTCATTATCTT
GAGACGATTCTTTTTAATGTCGATAAACGACTACCGACCGATCTATTAATCAGCTTTGGGAATTTAAAGGGACTATTTTA
TCAAACCGATAGTGCGGAGCAACTTTCCCATGGCTTGGCGCAGATCATTAATGGCCAAAATTGGTTGCCTCGTCATGTTT
CGAACCAATTATTACATCATTTTCGTTACGCCTTTCATGAGCAACATACCAAAGCCACTCTCGATCTTACGGTTCGAGAA
ATACAGATTTTACGCTGTTTGCAAGCGCAAGCTTCCAACGATGATATTGCGAAGAACTTATTTATCAGCGAACTAACCGT
AAAATCTCATTTGTACCAAATTTATAAAAAGCTCGCGGTAAAAAACCGAGCTCAAGCGATATCTTGGGCCAATCACCATC
TTTTTCAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

60.93

99.537

0.606
  qstR Vibrio parahaemolyticus RIMD 2210633

46.512

99.537

0.463
  qstR Vibrio campbellii strain DS40M4

46.047

99.537

0.458