Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG329_RS29430 Genome accession   NZ_CP109422
Coordinates   6594637..6595323 (+) Length   228 a.a.
NCBI ID   WP_405799429.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01506     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6589637..6600323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG329_RS29395 (OG329_29385) - 6589647..6590834 (-) 1188 WP_405799425.1 acyltransferase family protein -
  OG329_RS29400 (OG329_29390) - 6591288..6591482 (+) 195 WP_405799426.1 hypothetical protein -
  OG329_RS29405 (OG329_29395) - 6591504..6591689 (+) 186 WP_405799427.1 hypothetical protein -
  OG329_RS29420 (OG329_29410) tig 6592275..6593699 (+) 1425 WP_405799428.1 trigger factor -
  OG329_RS29425 (OG329_29415) clpP 6593979..6594584 (+) 606 WP_405802086.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG329_RS29430 (OG329_29420) clpP 6594637..6595323 (+) 687 WP_405799429.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG329_RS29435 (OG329_29425) clpX 6595471..6596763 (+) 1293 WP_405799430.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG329_RS29440 (OG329_29430) - 6596842..6597837 (-) 996 WP_405799431.1 hypothetical protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 24753.15 Da        Isoelectric Point: 4.5793

>NTDB_id=676034 OG329_RS29430 WP_405799429.1 6594637..6595323(+) (clpP) [Streptomyces sp. NBC_01506]
MVNTPMNNYPGASASGLYTGPQVDNRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSMTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTAGKRLALPNARVLIHQPSSQTGREQLS
DLEIAANEILRMRAQLEDMLAKHSTTPIEKVRDDIERDKILTAEDALAYGLVDQIVSTRKTTAAAAAA

Nucleotide


Download         Length: 687 bp        

>NTDB_id=676034 OG329_RS29430 WP_405799429.1 6594637..6595323(+) (clpP) [Streptomyces sp. NBC_01506]
ATGGTGAACACCCCTATGAACAATTACCCCGGCGCCTCTGCGAGCGGCCTCTACACCGGCCCTCAGGTGGACAACCGCTA
TGTCATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTGTTCGAGGAGCGCG
TGATCTTCCTCGGAGTCCAGATCGACGACGCGTCGGCCAACGACGTCATGGCGCAGTTGCTGTGCCTGGAGTCCATGGAC
CCCGACCGTGACATCTCCATCTACATCAACAGCCCCGGCGGCTCGATGACGGCTCTCACCGCCATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGACAGGCCGCCTCCGCGGCGGCGGTCCTGCTCGCGGCCGGCACGG
CGGGCAAGCGCCTGGCCCTGCCGAACGCGCGCGTCCTGATCCACCAGCCGTCCAGCCAGACCGGCCGCGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAAATCCTGCGCATGCGCGCGCAGCTCGAGGACATGCTGGCCAAGCACTCCACGACGCC
GATCGAGAAGGTCCGCGACGACATCGAGCGCGACAAGATCCTGACCGCCGAGGACGCTCTGGCGTACGGTCTGGTCGACC
AGATCGTCTCGACCCGTAAGACCACGGCGGCGGCAGCGGCGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50.526

83.333

0.421
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.404

82.456

0.399
  clpP Streptococcus thermophilus LMG 18311

45.876

85.088

0.39
  clpP Streptococcus thermophilus LMD-9

45.876

85.088

0.39
  clpP Streptococcus pyogenes MGAS315

44.845

85.088

0.382
  clpP Streptococcus pyogenes JRS4

44.845

85.088

0.382
  clpP Streptococcus pneumoniae Rx1

45.312

84.211

0.382
  clpP Streptococcus pneumoniae D39

45.312

84.211

0.382
  clpP Streptococcus pneumoniae R6

45.312

84.211

0.382
  clpP Streptococcus pneumoniae TIGR4

45.312

84.211

0.382
  clpP Streptococcus mutans UA159

45.263

83.333

0.377
  clpP Lactococcus lactis subsp. cremoris KW2

43.455

83.772

0.364