Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MUU75_RS10150 Genome accession   NZ_CP095186
Coordinates   2148231..2149736 (+) Length   501 a.a.
NCBI ID   WP_245106296.1    Uniprot ID   -
Organism   Pseudoxanthomonas mexicana strain F31     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2143231..2154736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUU75_RS10125 (MUU75_10125) speA 2144008..2145897 (-) 1890 WP_245089545.1 arginine decarboxylase -
  MUU75_RS10130 (MUU75_10130) speE 2146126..2146983 (+) 858 WP_245089547.1 polyamine aminopropyltransferase -
  MUU75_RS10135 (MUU75_10135) - 2147045..2147413 (-) 369 WP_245089549.1 DUF6404 family protein -
  MUU75_RS10140 (MUU75_10140) - 2147429..2147767 (-) 339 WP_162110819.1 P-II family nitrogen regulator -
  MUU75_RS10145 (MUU75_10145) - 2147957..2148220 (+) 264 WP_245089551.1 accessory factor UbiK family protein -
  MUU75_RS10150 (MUU75_10150) comM 2148231..2149736 (+) 1506 WP_245106296.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MUU75_RS10155 (MUU75_10155) - 2149843..2151903 (+) 2061 WP_245089593.1 S9 family peptidase -
  MUU75_RS10160 (MUU75_10160) aceA 2151986..2153320 (-) 1335 WP_245089595.1 isocitrate lyase -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 52867.70 Da        Isoelectric Point: 9.4454

>NTDB_id=676014 MUU75_RS10150 WP_245106296.1 2148231..2149736(+) (comM) [Pseudoxanthomonas mexicana strain F31]
MSLALVNSRARAGVSAPPVRVEVHLSGGLPSTQIVGLPEAAVRESRDRVRAAILCAQFEFPTRRITVNLAPADLPKDGGR
FDLPIALGILAASGQIRREALADYEFLGELSLTGELRAVDGVLPAALAVAASGRTLVVPEPSGAEAALARQGHAFTGRTL
LEVCALLEGRKALPAAVAPPPLPSTVPDMADVRGQVHARRALEVAAAGGHHLLLIGSPGCGKTLLASRLPGLLPEASDAE
AMESAAIASVSGRGLDPARWRQRPYRAPHHTASAVALVGGGAQPRPGEISLAHNGVLFMDELPEWSRAALEVLREPLESG
TVTVSRAARTAEFPARFQLVAAMNPCPCGWAGDPSGRCRCGPDLVRRYRSRLSGPLLDRIDLHVHVPRLPPHELRPDAPD
GEGTAAIQARVVAARARQQARCGKPNARMGQAETMAHCRLQARDQALLERAVERLQLSARSLHRILRVARTIADLAGSEA
IATAHVTEALGYRGLDRGNAA

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=676014 MUU75_RS10150 WP_245106296.1 2148231..2149736(+) (comM) [Pseudoxanthomonas mexicana strain F31]
ATGAGTCTGGCCCTGGTGAACAGCCGGGCACGGGCGGGCGTGTCCGCGCCACCGGTGCGTGTCGAAGTCCACCTGTCCGG
CGGATTGCCATCCACGCAGATCGTCGGCCTGCCGGAAGCCGCCGTGCGGGAGTCCCGCGACCGCGTTCGCGCCGCCATCC
TGTGCGCGCAGTTCGAATTTCCCACGCGCCGCATCACCGTCAACCTGGCGCCGGCCGACCTGCCGAAGGATGGCGGGCGC
TTCGACCTGCCCATCGCGCTGGGCATCCTGGCGGCCAGCGGGCAGATCCGGCGGGAGGCGCTGGCGGACTACGAGTTCCT
GGGCGAGCTCAGCCTGACCGGCGAGCTGCGCGCGGTGGACGGTGTGCTGCCGGCCGCGCTGGCGGTGGCGGCCAGCGGGC
GCACGCTGGTGGTCCCCGAGCCCAGCGGCGCCGAGGCCGCCCTGGCGCGCCAGGGGCATGCGTTCACCGGCCGGACCCTG
CTGGAAGTCTGCGCGCTGCTGGAAGGGCGCAAGGCGCTGCCCGCGGCCGTCGCCCCGCCGCCGCTGCCCTCCACCGTCCC
CGACATGGCCGACGTGCGCGGCCAGGTGCATGCGCGGCGAGCGCTGGAAGTCGCGGCCGCAGGCGGGCACCACCTGCTGC
TGATCGGGTCCCCTGGCTGTGGGAAAACGCTGCTGGCCTCGCGCCTGCCCGGCCTGCTGCCCGAGGCCAGCGACGCCGAG
GCCATGGAGAGCGCCGCCATCGCCTCGGTCAGCGGACGTGGGCTGGACCCGGCCCGCTGGCGCCAGCGCCCGTATCGCGC
GCCGCATCACACCGCCAGCGCGGTGGCCCTGGTGGGCGGGGGCGCGCAGCCGCGGCCCGGCGAGATTTCCCTCGCGCACA
ATGGCGTGCTGTTCATGGACGAGCTGCCGGAATGGTCGCGCGCCGCGCTGGAAGTACTGCGCGAGCCGCTGGAATCGGGC
ACCGTCACCGTCTCGCGCGCCGCGCGGACTGCGGAATTCCCCGCCCGCTTCCAGCTGGTGGCCGCCATGAATCCGTGCCC
GTGCGGATGGGCGGGCGACCCCAGCGGCCGCTGCCGCTGCGGACCGGACCTGGTGCGGCGCTACCGCAGCCGGCTGTCCG
GCCCCCTGCTGGACCGCATCGACCTGCATGTGCACGTGCCGCGACTGCCGCCGCATGAACTCCGGCCCGATGCGCCGGAC
GGCGAAGGCACGGCCGCCATCCAGGCCCGCGTCGTCGCCGCGCGCGCACGCCAGCAGGCGCGCTGCGGCAAGCCGAATGC
GCGGATGGGCCAAGCCGAGACCATGGCGCACTGCCGCCTGCAGGCGCGCGACCAGGCCCTGCTGGAGCGCGCGGTGGAAC
GCCTGCAGCTGTCCGCGCGCAGCCTGCACCGGATCCTGCGCGTGGCACGCACCATCGCCGACCTGGCCGGCAGCGAGGCC
ATCGCCACCGCGCACGTAACCGAGGCGCTGGGCTACCGCGGCCTGGATCGCGGCAACGCAGCATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.912

99.601

0.557
  comM Vibrio campbellii strain DS40M4

54.709

99.601

0.545
  comM Glaesserella parasuis strain SC1401

52.372

100

0.529
  comM Haemophilus influenzae Rd KW20

51.984

100

0.523
  comM Legionella pneumophila str. Paris

50.704

99.202

0.503
  comM Legionella pneumophila strain ERS1305867

50.704

99.202

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.141

100

0.451