Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MUU73_RS10130 Genome accession   NZ_CP095184
Coordinates   2152922..2154427 (-) Length   501 a.a.
NCBI ID   WP_245120659.1    Uniprot ID   -
Organism   Pseudoxanthomonas mexicana strain F12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2147922..2159427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUU73_RS10115 (MUU73_10115) aceA 2148719..2150053 (+) 1335 WP_185894896.1 isocitrate lyase -
  MUU73_RS10120 (MUU73_10120) - 2150138..2152198 (-) 2061 WP_245120655.1 S9 family peptidase -
  MUU73_RS10125 (MUU73_10125) - 2152408..2152632 (+) 225 WP_245120657.1 hypothetical protein -
  MUU73_RS10130 (MUU73_10130) comM 2152922..2154427 (-) 1506 WP_245120659.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MUU73_RS10135 (MUU73_10135) - 2154438..2154701 (-) 264 WP_245089551.1 accessory factor UbiK family protein -
  MUU73_RS10140 (MUU73_10140) - 2154891..2155229 (+) 339 WP_162110819.1 P-II family nitrogen regulator -
  MUU73_RS10145 (MUU73_10145) - 2155246..2155614 (+) 369 WP_245120661.1 DUF6404 family protein -
  MUU73_RS10150 (MUU73_10150) speE 2155679..2156536 (-) 858 WP_245120663.1 polyamine aminopropyltransferase -
  MUU73_RS10155 (MUU73_10155) speA 2156780..2158669 (+) 1890 WP_245120665.1 arginine decarboxylase -
  MUU73_RS10160 (MUU73_10160) - 2158688..2159245 (+) 558 WP_245120667.1 hypothetical protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 52932.73 Da        Isoelectric Point: 9.1931

>NTDB_id=675987 MUU73_RS10130 WP_245120659.1 2152922..2154427(-) (comM) [Pseudoxanthomonas mexicana strain F12]
MSLALVNSRARAGVSAPPVRVEVHLSGGLPSTQIVGLPEAAVRESRDRVRAAILCAQFEFPTRRITVNLAPADLPKDGGR
FDLPIALGILAASGQIRRESLADYEFLGELSLTGELRAVDGVLPAALAVAASGRTLVVPEPSGAEAALARQGHAFTGRTL
LEVCALLEGRKVLPAAVAPPPLPSTVPDMAEVRGQVHARRALEVAAAGGHHLLLIGSPGCGKTLLASRLPGLLPEASDAE
AMESAAIASVSGRGLDAARWRQRPYRAPHHTASAVALVGGGAQPRPGEISLAHNGVLFMDELPEWSRAALEVLREPLESG
TVTVSRAARTAEFPARFQLVAAMNPCPCGWAGDPSGRCRCGPDLVRRYRSRLSGPLLDRIDLHVHVPRLPPHELRPDAPD
GEDTAAVQARVVAARARQQARCGKPNARMGQSETMAHCRLQARDQALLERAVERLQLSARSLHRILRVARTIADLAGSEA
IATAHVTEALGYRGLDRGSAA

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=675987 MUU73_RS10130 WP_245120659.1 2152922..2154427(-) (comM) [Pseudoxanthomonas mexicana strain F12]
ATGAGTCTGGCCCTGGTGAACAGCCGGGCACGGGCGGGCGTGTCCGCGCCCCCGGTCCGCGTGGAGGTGCATCTGTCCGG
CGGCCTGCCGTCCACGCAGATCGTCGGCCTGCCGGAAGCCGCGGTGCGGGAGTCCCGCGACCGCGTGCGCGCCGCCATCC
TGTGCGCGCAGTTCGAATTTCCCACGCGCCGCATCACCGTCAACCTGGCGCCGGCCGACCTGCCGAAGGATGGCGGGCGC
TTCGACCTGCCCATCGCGCTGGGCATCCTGGCGGCCAGCGGACAGATCCGGCGGGAGAGCCTTGCGGACTACGAGTTCCT
GGGCGAACTCAGCCTGACCGGCGAACTGCGCGCGGTCGACGGCGTGCTGCCGGCCGCGCTGGCGGTGGCGGCCAGCGGGC
GCACGCTGGTCGTCCCCGAGCCCAGCGGCGCCGAGGCCGCCCTGGCGCGCCAGGGGCATGCGTTCACCGGCCGGACCCTG
CTGGAAGTCTGCGCGCTGCTGGAAGGGCGCAAGGTGCTGCCCGCGGCCGTCGCACCACCGCCGCTGCCCTCCACCGTTCC
CGACATGGCCGAAGTGCGCGGCCAGGTGCATGCGCGGCGGGCGCTGGAAGTCGCCGCCGCAGGCGGGCACCACCTGCTGC
TGATCGGCTCCCCCGGCTGCGGGAAGACGCTGCTGGCCTCGCGCCTGCCCGGCCTGCTGCCCGAAGCCAGCGACGCCGAG
GCCATGGAGAGCGCCGCCATCGCCTCGGTCAGCGGACGTGGGCTGGACGCGGCCCGCTGGCGCCAGCGCCCGTATCGCGC
CCCGCATCACACCGCCAGCGCGGTGGCGCTGGTGGGCGGTGGCGCACAGCCGCGGCCCGGCGAGATTTCCCTCGCGCACA
ACGGCGTGTTGTTCATGGACGAACTGCCGGAATGGTCGCGTGCCGCGCTGGAAGTCCTGCGCGAGCCGCTGGAGTCCGGC
ACGGTCACCGTCTCGCGCGCCGCGCGGACCGCAGAATTCCCGGCCCGCTTCCAACTCGTGGCCGCCATGAATCCGTGCCC
ATGCGGATGGGCGGGCGACCCGAGCGGTCGCTGCCGCTGCGGGCCCGACCTGGTCCGGCGCTACCGCAGCCGACTGTCGG
GCCCGCTGCTGGACCGTATCGACCTGCATGTGCACGTACCGCGACTGCCGCCGCATGAACTCCGGCCCGATGCGCCGGAC
GGCGAAGACACGGCCGCCGTCCAGGCCCGCGTCGTCGCCGCGCGCGCGCGCCAGCAGGCGCGCTGTGGCAAACCGAATGC
GCGGATGGGCCAATCGGAAACCATGGCCCATTGCCGGCTCCAGGCACGCGACCAGGCCCTGCTCGAGCGTGCCGTGGAGC
GCCTGCAGCTCTCGGCGCGCAGCCTGCATCGCATCCTGCGCGTGGCCCGCACCATCGCCGACCTGGCCGGCAGCGAGGCC
ATCGCCACCGCGCACGTGACCGAAGCCCTGGGCTACCGCGGCCTGGATCGCGGCAGCGCAGCATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.912

99.601

0.557
  comM Vibrio campbellii strain DS40M4

54.709

99.601

0.545
  comM Glaesserella parasuis strain SC1401

52.174

100

0.527
  comM Haemophilus influenzae Rd KW20

51.984

100

0.523
  comM Legionella pneumophila str. Paris

50.201

99.401

0.499
  comM Legionella pneumophila strain ERS1305867

50.201

99.401

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.379

100

0.449