Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MUY30_RS01610 Genome accession   NZ_CP095165
Coordinates   355028..355552 (+) Length   174 a.a.
NCBI ID   WP_126289019.1    Uniprot ID   -
Organism   Enterobacter roggenkampii strain K475-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 350028..360552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUY30_RS01590 (MUY30_01590) aphA 350351..351064 (+) 714 WP_021242762.1 acid phosphatase AphA -
  MUY30_RS01595 (MUY30_01595) - 351178..351594 (+) 417 WP_008503381.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  MUY30_RS01600 (MUY30_01600) - 351597..351950 (+) 354 WP_008503382.1 MmcQ/YjbR family DNA-binding protein -
  MUY30_RS01605 (MUY30_01605) uvrA 351954..354776 (-) 2823 WP_008503383.1 excinuclease ABC subunit UvrA -
  MUY30_RS01610 (MUY30_01610) ssb 355028..355552 (+) 525 WP_126289019.1 single-stranded DNA-binding protein SSB1 Machinery gene
  MUY30_RS01615 (MUY30_01615) - 355615..355896 (-) 282 WP_008503385.1 YjcB family protein -
  MUY30_RS01620 (MUY30_01620) - 356532..358097 (+) 1566 WP_023293514.1 EAL domain-containing protein -
  MUY30_RS01625 (MUY30_01625) soxS 358104..358430 (-) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -
  MUY30_RS01630 (MUY30_01630) soxR 358529..358987 (+) 459 WP_008503388.1 redox-sensitive transcriptional activator SoxR -
  MUY30_RS01635 (MUY30_01635) - 359350..360021 (+) 672 WP_008503389.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=675886 MUY30_RS01610 WP_126289019.1 355028..355552(+) (ssb) [Enterobacter roggenkampii strain K475-2]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=675886 MUY30_RS01610 WP_126289019.1 355028..355552(+) (ssb) [Enterobacter roggenkampii strain K475-2]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGTGTTGAGAAGTACACCACTGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCGGCGCCG
TCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.787
  ssb Glaesserella parasuis strain SC1401

57.377

100

0.603
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.368