Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KF715C_RS29575 Genome accession   NZ_AP015029
Coordinates   6404799..6406289 (+) Length   496 a.a.
NCBI ID   WP_024717669.1    Uniprot ID   A0A1L7NLP4
Organism   Pseudomonas putida strain KF715     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6399799..6411289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KF715C_RS29550 (KF715C_ch57640) glnK 6400731..6401069 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  KF715C_RS29555 (KF715C_ch57650) - 6401431..6401697 (+) 267 WP_024717668.1 accessory factor UbiK family protein -
  KF715C_RS29560 (KF715C_ch57660) - 6401698..6402051 (+) 354 WP_016489776.1 gamma-glutamylcyclotransferase family protein -
  KF715C_RS29565 (KF715C_ch57670) - 6402089..6402517 (+) 429 WP_016489777.1 TOBE domain-containing protein -
  KF715C_RS29570 (KF715C_ch57680) - 6402523..6404541 (-) 2019 WP_096426906.1 DUF4034 domain-containing protein -
  KF715C_RS29575 (KF715C_ch57690) comM 6404799..6406289 (+) 1491 WP_024717669.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KF715C_RS29580 (KF715C_ch57700) - 6406489..6408276 (+) 1788 WP_096426907.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  KF715C_RS29585 (KF715C_ch57710) - 6408281..6408565 (-) 285 WP_024717670.1 HigA family addiction module antitoxin -
  KF715C_RS29590 - 6408577..6408855 (-) 279 WP_080642829.1 type II toxin-antitoxin system RelE/ParE family toxin -
  KF715C_RS29595 (KF715C_ch57720) ltrA 6409360..6410781 (-) 1422 WP_042914397.1 group II intron reverse transcriptase/maturase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52873.64 Da        Isoelectric Point: 7.6998

>NTDB_id=67579 KF715C_RS29575 WP_024717669.1 6404799..6406289(+) (comM) [Pseudomonas putida strain KF715]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLSYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPTATLADMECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPYAANGLILNQRPYPDLSEVQGQLAAKRALMLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHTPLSSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
EASADVAARVAQAREVQQRRQGCVNAFLDLDGLRRHCGLTAADQAWLEGACERLTLSLRAAHRLLKVARTLADLEGCEAI
GRPHLAEALQYRPGSS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=67579 KF715C_RS29575 WP_024717669.1 6404799..6406289(+) (comM) [Pseudomonas putida strain KF715]
ATGTCACTAGCCCTCGTCCACAGCCGCGCCCAGGTGGGTGTGCAGGCACCCGCGGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCCCATCTCACTCTGGTCGGCCTGCCAGAAACCACGGTCAAGGAAAGCAAGGACCGGGTACGCAGCGCCATCG
TCAACTCCGGGCTTAGCTACCCGCAGCGGCGCATTACCCAGAACCTCGCCCCCGCCGACCTGCCCAAGGATGGCGGGCGC
TATGACTTGGCCATTGCCCTGGGTATCCTCGCCGCAGATGGCCAGGTGCCGACTGCCACCCTGGCCGATATGGAATGCCT
GGGCGAACTGGCGCTTTCGGGGAAATTGCGCCCTGTCCAGGGCGTGCTACCTGCGGCCCTGGCGGCACGCGAAGCAGGCC
GGGCGCTGGTGGTGCCACGGGAAAATGCCGAGGAAGCCAGCCTGGCAGGCGGGCTGGTGGTGTATGCGGTGGGCCACCTG
CTGGAGTTGGTCGCCCACCTGAACGGCCAGGTGCCATTGCCGCCGTACGCGGCCAATGGCTTGATCCTGAATCAACGTCC
CTACCCTGACCTGAGCGAGGTGCAGGGCCAACTGGCGGCCAAGCGCGCGTTGATGCTGGCGGCGGCTGGGGCGCACAACC
TGCTGTTCACCGGGCCACCCGGCACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCAGGGCTGCTGCCACCGTTGGACGAG
CACGAGGCGCTCGAGGTGGCTGCCATTCAGTCGGTCAGCGGGCATACACCGCTGAGCAGTTGGCCGCAGCGACCGTTTCG
CCATCCCCACCACTCCGCATCCGGCCCGGCACTGGTTGGAGGCAGCAGCCGGCCGCAACCGGGCGAAATCACCCTCGCCC
ACCATGGCGTGCTGTTTCTCGATGAACTGCCAGAGTTCGAGCGGCGTGTGCTGGAGGTGCTGCGCGAGCCGCTGGAGTCG
GGCGAGATCGTGATTGCCCGGGCACGCGACAAAGTGCGCTTTCCGGCGCGCTTTCAGCTGGTGGCGGCGATGAACCCATG
CCCTTGCGGCTACCTGGGCGACCCTACTGGCCGCTGCCGCTGCAGCACCGAGCAGATCGCGCGGTACCGCAACAAGCTAT
CAGGGCCGCTGCTGGACCGCATCGACCTGCACCTGACCGTGGCTCGCGAAAGCACCACGCTGAACAATCAGCCCTGTGGT
GAAGCCAGTGCCGATGTGGCAGCCAGGGTAGCGCAGGCGCGGGAGGTACAGCAGCGCCGCCAAGGGTGCGTGAATGCGTT
TCTCGACCTCGACGGGTTGCGTCGCCATTGCGGATTGACGGCGGCGGACCAAGCTTGGCTGGAAGGGGCCTGCGAACGGT
TGACCTTGTCGTTGCGGGCAGCGCACCGGTTGTTGAAAGTGGCGCGGACACTGGCGGACCTCGAGGGTTGTGAGGCAATC
GGCCGGCCACATCTGGCCGAGGCCCTGCAGTACCGGCCGGGGAGCAGTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L7NLP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.162

99.798

0.56
  comM Haemophilus influenzae Rd KW20

55.2

100

0.556
  comM Vibrio cholerae strain A1552

55.556

99.798

0.554
  comM Glaesserella parasuis strain SC1401

53.892

100

0.544
  comM Legionella pneumophila str. Paris

49.499

100

0.498
  comM Legionella pneumophila strain ERS1305867

49.499

100

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.72

100

0.474

Multiple sequence alignment