Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUA12_RS13170 Genome accession   NZ_CP095104
Coordinates   2630586..2631104 (-) Length   172 a.a.
NCBI ID   WP_002480323.1    Uniprot ID   -
Organism   Staphylococcus simulans strain IVB6179     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2625586..2636104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA12_RS13135 (MUA12_13075) - 2625667..2626290 (+) 624 WP_262577669.1 NDxxF motif lipoprotein -
  MUA12_RS13140 (MUA12_13080) - 2626357..2626797 (-) 441 WP_070864415.1 carboxymuconolactone decarboxylase family protein -
  MUA12_RS13145 (MUA12_13085) - 2626956..2628122 (+) 1167 WP_262577670.1 ArgE/DapE family deacylase -
  MUA12_RS13150 (MUA12_13090) - 2628179..2628766 (-) 588 Protein_2554 histidine phosphatase family protein -
  MUA12_RS13155 (MUA12_13095) - 2629135..2629512 (-) 378 WP_262577671.1 hypothetical protein -
  MUA12_RS13160 (MUA12_13100) - 2629582..2629746 (-) 165 WP_262577672.1 hypothetical protein -
  MUA12_RS13165 (MUA12_13105) rpsR 2630290..2630532 (-) 243 WP_002480324.1 30S ribosomal protein S18 -
  MUA12_RS13170 (MUA12_13110) ssbA 2630586..2631104 (-) 519 WP_002480323.1 single-stranded DNA-binding protein Machinery gene
  MUA12_RS13175 (MUA12_13115) rpsF 2631126..2631422 (-) 297 WP_002480322.1 30S ribosomal protein S6 -
  MUA12_RS13180 (MUA12_13120) - 2631605..2632555 (-) 951 WP_262577673.1 thermonuclease family protein -
  MUA12_RS13185 (MUA12_13125) - 2632709..2632966 (+) 258 WP_262577674.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
  MUA12_RS13190 (MUA12_13130) - 2632960..2633298 (+) 339 WP_002480319.1 type II toxin-antitoxin system PemK/MazF family toxin -
  MUA12_RS13195 (MUA12_13135) argF 2633573..2634576 (+) 1004 Protein_2563 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19044.65 Da        Isoelectric Point: 5.1953

>NTDB_id=675476 MUA12_RS13170 WP_002480323.1 2630586..2631104(-) (ssbA) [Staphylococcus simulans strain IVB6179]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVSNYLFKGSLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKSQNQRHGQQSGGNNQFQSYGQNYGGQQQGQNTSSYQNNNSSNAGQSDNPFANTN
GPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=675476 MUA12_RS13170 WP_002480323.1 2630586..2631104(-) (ssbA) [Staphylococcus simulans strain IVB6179]
ATGATTAACAGAGTTGTATTAGTAGGCCGTTTAACTAAGGATCCTGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACTTTTACTCTAGCGGTTAATCGTACGTTTACGAATGCGCAAGGGGAACGTGAAGCGGACTTTATTAACTGTGTTGTTT
TTAGAAAACAAGCAGAAAACGTAAGCAATTACTTGTTTAAAGGAAGTCTTGCAGGCGTTGATGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGACGCCGTATCTTTGTTACTGAAGTTGTATGTGACAGTGTTCAATTCCTTGAACCAAAATC
ACAAAACCAACGTCATGGCCAACAATCTGGCGGTAATAACCAATTCCAGAGCTATGGTCAAAACTATGGTGGTCAACAAC
AAGGACAAAATACGTCATCTTATCAAAACAACAATTCATCCAACGCTGGTCAATCAGACAATCCATTCGCAAATACGAAC
GGACCTATTGACATCAGTGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.221

100

0.634
  ssb Latilactobacillus sakei subsp. sakei 23K

56.897

100

0.576
  ssb Glaesserella parasuis strain SC1401

35.326

100

0.378
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

63.953

0.372
  ssb Vibrio cholerae strain A1552

34.831

100

0.36