Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   OG607_RS35485 Genome accession   NZ_CP109392
Coordinates   7718283..7720379 (+) Length   698 a.a.
NCBI ID   WP_405732357.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01537 strain NBC 01537     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7713283..7725379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG607_RS35470 (OG607_35365) - 7714425..7714808 (-) 384 WP_405732349.1 hypothetical protein -
  OG607_RS35475 (OG607_35370) - 7714900..7717083 (+) 2184 WP_405732352.1 bifunctional polysaccharide deacetylase/glycosyltransferase family 2 protein -
  OG607_RS35480 (OG607_35375) - 7717080..7718237 (+) 1158 WP_405732354.1 acyltransferase -
  OG607_RS35485 (OG607_35380) uvrB 7718283..7720379 (+) 2097 WP_405732357.1 excinuclease ABC subunit UvrB Machinery gene
  OG607_RS35490 (OG607_35385) - 7720474..7721052 (+) 579 WP_405732359.1 TerD family protein -
  OG607_RS35495 (OG607_35390) - 7721064..7722668 (+) 1605 WP_405732362.1 TerD family protein -
  OG607_RS35500 (OG607_35395) - 7722889..7723875 (+) 987 WP_405732365.1 TerC family protein -
  OG607_RS35505 (OG607_35400) - 7724001..7724297 (+) 297 WP_405732367.1 hypothetical protein -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 78384.98 Da        Isoelectric Point: 4.7812

>NTDB_id=675419 OG607_RS35485 WP_405732357.1 7718283..7720379(+) (uvrB) [Streptomyces sp. NBC_01537 strain NBC 01537]
MRPVSDIERTVAPFEVVSPFNPSGDQPTAIDDLERRIRAGEQDVVLLGATGTGKSATTAWMVERLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTP
QEYIDRMVRLKVGDEIDRDRLLRKFVDIQYARNDVAFSRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVITDDQQLYVFPASHYVAGPERMERAIAGIEKELEGQLALMEKQGKLLEAQRLRMRTTYDIEMMRQIGTCSGIENYSRH
IDGREGGTAPDTLIDYFPEDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFLGRVGQTVYL
SATPGPYELSRGDGVVEQIIRPTGLIDPEVVVKPTQGQIDDLVHEIRIRAEKNERVLVTTLTKKMSEDLTDYMLELGIQV
RYLHSDIDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADRITPSMAKAIDETNRRREKQIAYNTENGIDPQPLRKKIAGIMDSFAREDADTEELLGSGRQRSRGKAPVPGLSAKAGG
KRAGKSLPAEELADLIGELTEQMHAAAAELQFEVAARLRDELGELKKELRQMREAGMA

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=675419 OG607_RS35485 WP_405732357.1 7718283..7720379(+) (uvrB) [Streptomyces sp. NBC_01537 strain NBC 01537]
ATGCGGCCCGTATCAGACATCGAACGCACCGTGGCGCCCTTCGAGGTCGTCAGCCCCTTCAATCCCAGCGGTGACCAGCC
CACCGCCATCGACGACCTGGAGCGGCGCATCCGCGCCGGCGAACAGGATGTCGTCCTGCTGGGGGCGACCGGCACCGGAA
AGTCGGCGACGACGGCGTGGATGGTCGAGCGGCTGCAGCGCCCGACACTGGTGATGGCGCCGAACAAGACACTCGCCGCG
CAGCTGGCCAACGAATTCCGCGAGCTGCTTCCGAACAACGCTGTCGAATACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTATGTCCCGCAGACGGACACCTATATCGAGAAGGACTCCTCGATCAACGAGGAGGTCGAGCGGCTCCGCCACT
CGGCGACGAATTCCCTGCTCACCCGGCGCGATGTGATCGTCGTCGCGTCCGTGTCCTGCATCTACGGCCTCGGCACGCCG
CAGGAATACATCGACCGCATGGTGCGCCTCAAGGTCGGCGACGAGATCGACCGCGACCGGTTGCTGCGCAAGTTCGTCGA
CATCCAGTACGCCCGCAATGACGTGGCGTTCTCCCGCGGCACATTCCGCGTGCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTCGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCGCTGTCCACCCTCCACCCGCTCACCGGC
GAGGTCATCACCGACGACCAGCAGCTCTACGTGTTCCCGGCCAGCCACTACGTGGCCGGTCCGGAGCGCATGGAGCGGGC
CATCGCGGGGATCGAGAAGGAGCTCGAAGGACAGCTCGCGCTCATGGAGAAGCAGGGCAAGCTCCTGGAGGCGCAGCGGC
TGCGCATGCGCACGACGTACGACATCGAGATGATGCGGCAGATCGGCACCTGCTCGGGCATCGAGAACTACTCACGCCAC
ATCGACGGCCGCGAGGGCGGCACCGCGCCGGACACCCTCATCGACTACTTCCCGGAGGACTTTCTCCTGGTCATCGACGA
GTCGCATGTCACCGTGCCGCAGATCGGCGCGATGTACGAGGGCGACGCCTCCCGCAAGCGCACCCTCGTCGACCACGGCT
TCCGGCTGCCGTCCGCACTGGACAACCGGCCGCTGAAGTGGGAGGAGTTCCTCGGGCGGGTCGGCCAGACCGTGTACCTG
TCGGCGACCCCGGGCCCGTACGAGCTGTCGCGCGGCGACGGGGTCGTCGAGCAGATCATCCGGCCGACCGGTCTGATCGA
CCCCGAGGTGGTCGTCAAGCCGACCCAGGGACAGATCGACGACCTGGTGCACGAGATCCGTATCCGCGCCGAGAAGAACG
AACGCGTCCTGGTCACCACCCTCACCAAGAAGATGTCCGAGGACCTCACCGACTACATGCTGGAACTGGGCATCCAGGTG
CGGTATCTGCACAGTGACATCGACACCCTGCGCCGGGTCGAGCTGCTGCGCGAGCTGCGCGCGGGCGAGTACGACGTGCT
GGTGGGCATCAACCTGCTGCGTGAGGGCCTCGACCTGCCCGAGGTGTCGCTGGTGGCGATCCTGGACGCCGACAAGGAGG
GCTTCCTGCGCTCGGGGACGTCGCTGATCCAGACCATCGGCCGCGCGGCGCGCAATGTGTCGGGTCAGGTCCACATGTAC
GCGGACCGGATCACGCCGTCGATGGCCAAGGCCATCGACGAGACCAACCGGCGGCGCGAGAAGCAGATCGCGTACAACAC
GGAGAACGGCATCGACCCGCAGCCGCTGCGGAAGAAGATCGCCGGGATCATGGACTCCTTCGCTCGTGAGGACGCCGACA
CCGAGGAGCTGCTCGGCAGCGGCCGGCAGCGCTCGCGGGGCAAGGCGCCGGTGCCGGGCCTGTCGGCGAAGGCGGGCGGC
AAGCGCGCGGGGAAGAGCCTGCCGGCGGAGGAGCTGGCGGATCTCATCGGGGAGCTGACCGAGCAGATGCACGCGGCGGC
GGCGGAGCTGCAGTTCGAGGTGGCGGCGCGGCTGCGCGACGAGCTGGGGGAGCTGAAGAAGGAGCTGCGCCAGATGAGGG
AGGCCGGAATGGCCTGA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(559-600)

UvrB/uvrC motif (UVR)

(655-688)

UvrB interaction domain (UvrB_inter)

(168-257)

Helicase conserved C-terminal domain (Helicase_C)

(443-551)

Type III restriction enzyme, res subunit (ResIII)

(23-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

58.667

96.705

0.567
  uvrB Streptococcus pneumoniae R6

58.667

96.705

0.567
  uvrB Streptococcus pneumoniae D39

58.667

96.705

0.567