Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GJW30_RS16090 Genome accession   NZ_AP014946
Coordinates   3309036..3309554 (-) Length   172 a.a.
NCBI ID   WP_096357110.1    Uniprot ID   A0A0S3PXT4
Organism   Variibacter gotjawalensis strain GJW-30     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3304036..3314554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJW30_RS16065 (GJW-30_1_03220) - 3305330..3305767 (+) 438 WP_096357100.1 thioesterase family protein -
  GJW30_RS16070 (GJW-30_1_03221) - 3305770..3307032 (+) 1263 WP_197703736.1 amidase -
  GJW30_RS16075 (GJW-30_1_03222) - 3307029..3307496 (-) 468 WP_096357104.1 hypothetical protein -
  GJW30_RS16080 (GJW-30_1_03223) - 3307515..3308183 (-) 669 WP_096357106.1 glutathione S-transferase -
  GJW30_RS16085 (GJW-30_1_03224) - 3308351..3308749 (+) 399 WP_096357108.1 DUF2306 domain-containing protein -
  GJW30_RS16090 (GJW-30_1_03225) ssb 3309036..3309554 (-) 519 WP_096357110.1 single-stranded DNA-binding protein Machinery gene
  GJW30_RS16095 (GJW-30_1_03226) - 3309819..3310421 (+) 603 WP_096357112.1 HdeD family acid-resistance protein -
  GJW30_RS16100 (GJW-30_1_03227) - 3310444..3310734 (+) 291 WP_197703737.1 putative quinol monooxygenase -
  GJW30_RS16105 (GJW-30_1_03228) - 3310738..3311280 (-) 543 WP_157746767.1 TetR/AcrR family transcriptional regulator -
  GJW30_RS16110 (GJW-30_1_03229) - 3311365..3311721 (+) 357 WP_096357118.1 hypothetical protein -
  GJW30_RS16115 (GJW-30_1_03230) - 3311718..3312485 (-) 768 WP_096357120.1 TIM barrel protein -
  GJW30_RS16120 (GJW-30_1_03231) - 3312501..3313136 (-) 636 WP_096357122.1 aldolase -
  GJW30_RS16125 (GJW-30_1_03232) otnK 3313133..3314386 (-) 1254 WP_096357124.1 3-oxo-tetronate kinase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18646.61 Da        Isoelectric Point: 6.9889

>NTDB_id=67521 GJW30_RS16090 WP_096357110.1 3309036..3309554(-) (ssb) [Variibacter gotjawalensis strain GJW-30]
MAGSVNKVILIGNLGADPEIRRTQDGRPIANLRIATSENWRDKATGERREKTEWHRVVIFNEGLCKVVEQYVKKGSKLYI
EGSLQTRKWQDQSGQDRYSTEVVLQGFNSVLTMLDGRGESSGSFGGGDYDSGSNNVDFGSSGPRSGGGGARKPAMAGAGG
GRRDDMDDEIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=67521 GJW30_RS16090 WP_096357110.1 3309036..3309554(-) (ssb) [Variibacter gotjawalensis strain GJW-30]
ATGGCAGGTTCAGTCAACAAAGTGATTTTGATCGGCAACCTCGGCGCGGACCCGGAAATCCGCCGCACGCAGGATGGCCG
CCCGATTGCAAACCTTCGGATTGCGACGTCGGAAAACTGGCGCGACAAAGCGACGGGTGAGCGCCGCGAGAAAACCGAAT
GGCACCGCGTGGTGATCTTCAACGAAGGTCTCTGCAAGGTGGTCGAGCAGTATGTGAAGAAGGGCTCGAAGCTCTACATC
GAGGGCTCGTTGCAGACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGTTATTCGACCGAGGTCGTGCTGCAGGGCTT
CAACTCGGTGCTGACGATGCTCGATGGACGCGGCGAAAGCAGCGGCTCGTTCGGCGGTGGCGATTACGACAGCGGCTCGA
ACAATGTCGACTTCGGTTCGTCCGGCCCGCGCAGCGGTGGCGGCGGTGCGCGCAAGCCCGCGATGGCCGGCGCCGGCGGT
GGCCGTCGCGACGATATGGACGATGAGATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0S3PXT4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.128

100

0.523
  ssb Vibrio cholerae strain A1552

50.568

100

0.517
  ssb Neisseria gonorrhoeae MS11

35.87

100

0.384
  ssb Neisseria meningitidis MC58

36.264

100

0.384

Multiple sequence alignment