Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MT472_RS28435 Genome accession   NZ_CP094999
Coordinates   5937499..5939019 (+) Length   506 a.a.
NCBI ID   WP_038423929.1    Uniprot ID   A0AB35Q604
Organism   Klebsiella michiganensis strain fxq     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5932499..5944019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MT472_RS28415 (MT472_28415) - 5934064..5934993 (-) 930 WP_014227446.1 branched-chain amino acid transaminase -
  MT472_RS28420 (MT472_28420) ilvM 5935010..5935267 (-) 258 WP_004097471.1 acetolactate synthase 2 small subunit -
  MT472_RS28425 (MT472_28425) ilvG 5935264..5936910 (-) 1647 WP_014227445.1 acetolactate synthase 2 catalytic subunit -
  MT472_RS28430 (MT472_28430) ilvL 5937050..5937148 (-) 99 WP_001311244.1 ilv operon leader peptide -
  MT472_RS28435 (MT472_28435) comM 5937499..5939019 (+) 1521 WP_038423929.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MT472_RS28440 (MT472_28440) - 5939043..5939381 (-) 339 WP_004097464.1 DUF413 domain-containing protein -
  MT472_RS28445 (MT472_28445) hdfR 5939500..5940321 (+) 822 WP_004097454.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55209.71 Da        Isoelectric Point: 8.3570

>NTDB_id=674772 MT472_RS28435 WP_038423929.1 5937499..5939019(+) (comM) [Klebsiella michiganensis strain fxq]
MSLAIVYTRAALGIGAPLITVEVHISNGLPGLTMVGLPETTVREARDRVRSAIINSGYAYPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLKAPRLNQYEFVGELALTGALRGVPGAISSAMEAIKAGRKIVISNENSPEVGLIGGSDCLIATDL
QEVCAFLEGRHALANPLPEGEYTDETSVDLRDVIGQRQGKRALEIIAAGGHNLLMIGPPGTGKTMLASRLPGLLPPLSNQ
EALESAAVLSLVDSRHVMKNWRRRPFRAPHHSASLAAMVGGGSIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GVIHISRTRAKIDYPARFQLIAAMNPSPTGHYQGQHNRASPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGVLSQGTNEE
ESSACVRQRVLAARERQLSRQKKLNAHLGNDEMKICCRLHKDDAVWLEQTLIQLGLSIRAWQRLIKVSRTIADIEAVERI
ERHHLQEALGYRAIDRMLSHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=674772 MT472_RS28435 WP_038423929.1 5937499..5939019(+) (comM) [Klebsiella michiganensis strain fxq]
ATGTCACTCGCCATTGTTTACACCCGCGCCGCTCTCGGGATCGGTGCCCCGCTTATCACGGTTGAAGTTCATATCAGCAA
CGGGCTCCCAGGCCTGACAATGGTAGGACTGCCTGAAACAACGGTTAGAGAAGCGCGTGACCGGGTACGTAGTGCGATTA
TCAACAGCGGCTACGCTTATCCGGCGAAAAAAATCACCATCAATCTGGCCCCGGCCGATCTGCCAAAAGAAGGGGGAAGA
TATGATTTACCTATCGCTCTCGCGCTTCTGGTGGCCTCAGAGCAGCTAAAGGCCCCCAGGCTAAATCAATATGAGTTTGT
CGGCGAGCTGGCGCTTACAGGCGCTCTGCGTGGCGTTCCTGGGGCCATATCCAGCGCCATGGAGGCCATAAAAGCGGGGC
GGAAGATTGTTATCTCTAATGAGAATTCTCCAGAGGTGGGGTTAATCGGCGGCAGTGACTGCCTTATCGCCACCGATCTC
CAGGAAGTCTGCGCTTTTCTCGAAGGTCGACATGCCCTGGCTAACCCCCTTCCAGAAGGGGAATATACGGATGAAACATC
GGTTGATCTGCGTGATGTTATTGGCCAACGGCAGGGGAAACGAGCGCTGGAAATCATCGCTGCAGGTGGTCACAACCTGC
TGATGATAGGCCCGCCCGGCACAGGAAAAACGATGCTCGCCAGTCGATTACCGGGACTACTGCCGCCGCTGAGTAATCAG
GAAGCGCTGGAAAGCGCGGCAGTACTTAGCCTGGTCGATTCCAGGCATGTCATGAAAAATTGGCGCCGCAGGCCCTTTCG
TGCCCCGCATCATAGCGCCTCCCTGGCGGCCATGGTGGGCGGAGGCTCAATTCCGGCACCGGGAGAGATCTCCCTTGCCC
ATAACGGAGTCCTGTTCCTGGATGAGCTGCCTGAATTCGAACGCAGGGTGCTGGATGCGTTACGCGAACCCATTGAGTCA
GGGGTTATCCATATCTCACGCACGCGCGCCAAAATCGATTATCCAGCCCGTTTCCAGCTTATTGCAGCGATGAATCCCAG
CCCGACAGGGCACTATCAGGGCCAGCATAATCGCGCTTCACCTGAACAGACGCTACGCTACCTGGGTCGTTTATCCGGCC
CGTTTCTTGACCGATTCGATCTCTCCCTGGAGATCCCACTTCCGCCGCCGGGGGTGCTCAGCCAGGGAACAAACGAAGAG
GAAAGTAGCGCCTGCGTACGCCAACGTGTTCTGGCCGCACGCGAAAGGCAGCTATCGCGGCAGAAAAAACTTAACGCGCA
TCTGGGAAATGATGAGATGAAAATCTGCTGCCGGCTTCATAAAGATGATGCTGTCTGGCTGGAGCAGACGCTAATACAGC
TCGGGCTTTCAATCCGCGCCTGGCAGCGCCTGATTAAAGTGTCCCGAACTATTGCCGATATTGAGGCTGTCGAACGCATC
GAACGCCATCATTTGCAGGAGGCTCTCGGCTATCGGGCAATAGACAGAATGTTGAGCCATCTACAAAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

59.1

100

0.597
  comM Glaesserella parasuis strain SC1401

59.172

100

0.593
  comM Vibrio campbellii strain DS40M4

59.562

99.209

0.591
  comM Vibrio cholerae strain A1552

59.443

99.407

0.591
  comM Legionella pneumophila str. Paris

47.984

98.024

0.47
  comM Legionella pneumophila strain ERS1305867

47.984

98.024

0.47
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.107

100

0.439