Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L9B60_RS10685 Genome accession   NZ_CP094975
Coordinates   2380779..2382272 (+) Length   497 a.a.
NCBI ID   WP_249678455.1    Uniprot ID   -
Organism   Pseudomonas abieticivorans strain PIA16     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2375779..2387272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L9B60_RS10665 glnK 2376822..2377160 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  L9B60_RS10670 - 2377573..2377833 (+) 261 WP_249678452.1 accessory factor UbiK family protein -
  L9B60_RS10675 - 2377988..2378899 (+) 912 WP_249678453.1 LysR family transcriptional regulator -
  L9B60_RS10680 - 2378997..2380676 (+) 1680 WP_249678454.1 methyl-accepting chemotaxis protein -
  L9B60_RS10685 comM 2380779..2382272 (+) 1494 WP_249678455.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  L9B60_RS10690 - 2382488..2382916 (-) 429 WP_249679705.1 hypothetical protein -
  L9B60_RS10695 - 2383106..2384320 (-) 1215 WP_249678456.1 aldose 1-epimerase family protein -
  L9B60_RS10700 - 2384416..2385750 (-) 1335 WP_249678457.1 amidase -
  L9B60_RS10705 - 2385747..2387081 (-) 1335 WP_249678458.1 MFS transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52777.62 Da        Isoelectric Point: 7.9015

>NTDB_id=674647 L9B60_RS10685 WP_249678455.1 2380779..2382272(+) (comM) [Pseudomonas abieticivorans strain PIA16]
MALSIVHSRAQVGVGAPAVTVEAHLANGLPALTLVGLPEASVKESKDRVRSAIINSGLNFPNRRITLNLAPADLPKDGGR
FDLAIALGILAASGQVPIASLREVECLGELALSGAVRSVQGVLPAALAAREAGRALVVPRDNAEEACLASGLSVIAANNL
QELVAHFNGQHIIAPYSANGLLLISKPYPDLNEVQGQVAAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLVE
KEALEVAAIQSVASHVPLKNWPQRPFRHPHHSASGAALVGGGSRPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GEIVIARARDKIRFPARFQLVAAMNPCPCGYLGEPSGRCSCSTDQIARYRNKLSGPLLDRIDLHLTVARETTALTPVAQP
GDDTASAAARVAEARDRQLQRQGCANAFLDLPGLREHCKLSTEDEKWLETACERLTLSLRAAHRLLKVARTLADLEKEDQ
IGRGHVAEALQYRPSGQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=674647 L9B60_RS10685 WP_249678455.1 2380779..2382272(+) (comM) [Pseudomonas abieticivorans strain PIA16]
ATGGCCCTATCCATCGTCCACAGCCGCGCCCAGGTGGGCGTGGGTGCGCCGGCCGTCACGGTTGAGGCGCACCTGGCCAA
CGGCTTGCCGGCGCTGACCCTGGTCGGCCTGCCGGAAGCCTCGGTGAAAGAAAGCAAAGACCGGGTGCGCAGCGCGATCA
TCAACTCCGGGCTCAACTTTCCCAACCGGCGTATTACCCTGAACCTGGCCCCTGCCGACCTGCCCAAGGACGGTGGGCGT
TTTGACCTGGCCATTGCCTTGGGCATCCTGGCGGCCAGCGGGCAGGTGCCGATTGCTTCGTTGCGGGAGGTGGAGTGCCT
GGGTGAACTGGCGCTTTCCGGGGCGGTGCGCTCGGTGCAGGGCGTGTTGCCGGCAGCACTCGCCGCGCGGGAGGCCGGCC
GGGCGCTGGTGGTACCCCGGGACAACGCCGAGGAGGCCTGCCTGGCCTCCGGGTTGAGCGTGATCGCCGCGAACAATCTG
CAAGAGCTGGTGGCGCACTTCAATGGGCAGCACATCATCGCGCCCTACAGCGCCAACGGCCTGTTGCTGATCAGCAAGCC
CTACCCCGACCTGAACGAAGTACAAGGCCAGGTCGCCGCCAAACGCGCGCTGCTGGTGGCCGCGGCCGGCGCCCACAATC
TGCTTTTCAGTGGCCCGCCGGGCACCGGCAAAACCCTGCTCGCCAGCCGCCTACCGGGTTTGCTGCCGCCGCTGGTTGAA
AAGGAAGCGCTGGAGGTGGCGGCCATCCAATCCGTCGCCAGCCACGTGCCGTTGAAAAACTGGCCGCAGCGGCCCTTCAG
GCACCCGCACCACTCAGCATCAGGTGCCGCGCTGGTCGGCGGTGGCAGCCGGCCGCAACCCGGCGAAATCACCCTGGCGC
ATCATGGCGTGCTGTTTCTCGATGAGCTGCCCGAGTTTGATCGCAAGGTGCTCGAGGTTCTGCGGGAGCCGCTGGAATCC
GGCGAGATCGTGATCGCCCGGGCTCGCGACAAAATTCGCTTCCCGGCGCGCTTCCAATTGGTTGCCGCCATGAACCCCTG
CCCCTGTGGATATCTCGGTGAACCCAGCGGGCGTTGCAGTTGCAGCACCGACCAGATCGCCCGCTACCGCAACAAACTCA
GCGGCCCGCTGCTGGACCGTATCGACCTGCACCTTACCGTCGCCCGGGAAACCACGGCGCTCACCCCGGTAGCACAACCC
GGCGACGACACTGCCAGTGCCGCAGCCCGTGTAGCCGAGGCGCGCGACAGGCAGTTGCAACGCCAGGGCTGCGCGAATGC
CTTCCTGGACCTGCCGGGCCTCAGGGAACACTGCAAGTTATCCACAGAAGACGAAAAATGGTTGGAGACCGCGTGCGAGC
GGCTGACCCTGTCACTGAGGGCGGCGCATCGGTTGTTGAAAGTGGCGCGGACTTTGGCGGATCTGGAGAAGGAGGACCAA
ATTGGGCGGGGGCATGTGGCGGAGGCGTTGCAGTATCGGCCTTCGGGGCAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.96

99.598

0.557
  comM Vibrio cholerae strain A1552

55.354

99.598

0.551
  comM Glaesserella parasuis strain SC1401

53.479

100

0.541
  comM Haemophilus influenzae Rd KW20

53.386

100

0.539
  comM Legionella pneumophila str. Paris

48.185

99.799

0.481
  comM Legionella pneumophila strain ERS1305867

48.185

99.799

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.4

100

0.457