Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L9B60_RS09555 Genome accession   NZ_CP094975
Coordinates   2134544..2135608 (-) Length   354 a.a.
NCBI ID   WP_249678243.1    Uniprot ID   -
Organism   Pseudomonas abieticivorans strain PIA16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2129544..2140608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L9B60_RS09530 aroK 2130192..2130710 (-) 519 WP_249678238.1 shikimate kinase AroK -
  L9B60_RS09535 pilQ 2130715..2132799 (-) 2085 WP_249678239.1 type IV pilus secretin PilQ family protein Machinery gene
  L9B60_RS09540 - 2132834..2133361 (-) 528 WP_249678240.1 pilus assembly protein PilP -
  L9B60_RS09545 pilO 2133358..2133981 (-) 624 WP_249678241.1 type 4a pilus biogenesis protein PilO -
  L9B60_RS09550 - 2133978..2134544 (-) 567 WP_249678242.1 PilN domain-containing protein -
  L9B60_RS09555 comM 2134544..2135608 (-) 1065 WP_249678243.1 pilus assembly protein PilM Machinery gene
  L9B60_RS09560 - 2135790..2138219 (+) 2430 WP_249678244.1 penicillin-binding protein 1A -
  L9B60_RS09565 - 2138375..2139643 (-) 1269 WP_249678245.1 malic enzyme-like NAD(P)-binding protein -
  L9B60_RS09570 rpmE 2139883..2140101 (-) 219 WP_249678246.1 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37912.45 Da        Isoelectric Point: 4.5693

>NTDB_id=674645 L9B60_RS09555 WP_249678243.1 2134544..2135608(-) (comM) [Pseudomonas abieticivorans strain PIA16]
MLGLFSKKANSLLGIDISSTSVKLLELSRTGNRYKVEAYAVEPLPANAVVEKNIAELEGVGQAISRVLVKAHSSCKSAAV
AVAGSAVITKIIEMDATLSEDDMENQLKVEADQYIPYPLEEVAIDFEVQGYSARNPERVDVLLAACRKENVEVREAALAL
AGLSARVVDVEAYALERAFGLLTEQLVDGDKPLTVAVVDIGATMTTLSVLHNGRIIYTREQLFGGRQLTEEIQRRYGLSM
EEAGLAKKQGGLPDDYNAEVLQPFKDAVVQQVSRSLQFFFAAGQFNAVDYIMLAGGTASISGLDHLIQLRLGTPAMVANP
FADMALSSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=674645 L9B60_RS09555 WP_249678243.1 2134544..2135608(-) (comM) [Pseudomonas abieticivorans strain PIA16]
GTGCTTGGACTCTTCAGCAAGAAAGCGAATTCGCTTTTGGGGATCGACATCAGCTCCACCTCGGTGAAGCTGCTGGAACT
CAGCCGTACCGGTAACCGCTACAAGGTCGAGGCCTACGCCGTCGAACCGTTGCCGGCCAATGCCGTGGTTGAAAAAAACA
TTGCTGAACTCGAAGGGGTCGGGCAGGCGATCAGTCGCGTGCTGGTCAAGGCCCACTCGTCCTGCAAAAGCGCAGCCGTG
GCCGTGGCTGGCTCCGCGGTGATCACCAAGATCATCGAAATGGACGCCACCTTGTCCGAAGACGACATGGAAAACCAGCT
CAAGGTCGAGGCCGACCAGTACATCCCCTATCCGCTTGAAGAGGTGGCCATCGACTTCGAGGTGCAGGGCTATTCGGCCC
GCAACCCCGAGCGCGTCGACGTGCTGCTGGCGGCCTGCCGCAAGGAAAACGTCGAGGTGCGCGAAGCCGCCCTGGCGTTG
GCCGGGCTCAGTGCGCGAGTGGTCGATGTCGAGGCCTATGCCCTGGAGCGCGCGTTTGGCCTGCTGACCGAGCAACTGGT
GGACGGCGACAAGCCGCTCACCGTGGCGGTGGTCGACATCGGCGCCACCATGACCACCCTCAGCGTGCTGCACAACGGCC
GCATCATCTATACCCGCGAGCAACTGTTCGGCGGCCGCCAGCTGACCGAAGAAATCCAGCGCCGCTACGGCTTGTCGATG
GAAGAAGCGGGGCTTGCGAAGAAGCAGGGCGGCCTGCCGGACGACTACAACGCCGAAGTGTTGCAGCCGTTCAAGGATGC
CGTGGTGCAGCAGGTATCGCGCTCCCTGCAGTTTTTCTTCGCGGCCGGCCAGTTCAATGCGGTCGACTACATCATGCTGG
CCGGCGGCACCGCGTCCATCTCCGGGCTCGATCACCTGATTCAGCTGCGCCTGGGCACCCCGGCCATGGTTGCCAACCCC
TTCGCCGACATGGCCTTGAGCAGCAAGGTCAATGCCGGTGCGCTGGCCAGCGATGCGCCGGCCCTGATGATTGCCTGCGG
CCTGGCGCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

56.497

100

0.565
  pilM Acinetobacter baumannii D1279779

56.497

100

0.565
  comM Acinetobacter baylyi ADP1

53.107

100

0.531
  pilM Legionella pneumophila strain ERS1305867

45.48

100

0.455