Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LEN_RS23270 Genome accession   NZ_AP014940
Coordinates   5866686..5868212 (+) Length   508 a.a.
NCBI ID   WP_096382286.1    Uniprot ID   -
Organism   Lysobacter enzymogenes strain M497-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5861686..5873212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEN_RS23250 (LEN_4704) - 5863373..5864029 (-) 657 WP_096382270.1 response regulator transcription factor -
  LEN_RS23255 (LEN_4705) - 5864068..5865492 (-) 1425 WP_198419999.1 HAMP domain-containing protein -
  LEN_RS23260 (LEN_4706) - 5865739..5866077 (-) 339 WP_031371341.1 P-II family nitrogen regulator -
  LEN_RS23265 (LEN_4707) - 5866409..5866675 (+) 267 WP_096382280.1 accessory factor UbiK family protein -
  LEN_RS23270 (LEN_4708) comM 5866686..5868212 (+) 1527 WP_096382286.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LEN_RS23275 (LEN_4709) - 5868411..5869241 (+) 831 WP_096382291.1 AraC family transcriptional regulator -
  LEN_RS25420 (LEN_4710) - 5869505..5869660 (+) 156 WP_170849203.1 hypothetical protein -
  LEN_RS23280 (LEN_4711) - 5869899..5870915 (+) 1017 WP_096382296.1 alpha/beta hydrolase -
  LEN_RS23285 (LEN_4712) - 5870940..5872049 (-) 1110 WP_096382301.1 nitronate monooxygenase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 53844.64 Da        Isoelectric Point: 8.7302

>NTDB_id=67463 LEN_RS23270 WP_096382286.1 5866686..5868212(+) (comM) [Lysobacter enzymogenes strain M497-1]
MNLALVHSRARTGVRAPAVRVEVHLGGGLPCMNIVGLPEAAVREAKDRVRAAIASAQYEFPQRRITVNLAPADLPKDGGR
YDLAIALGILAASGQLPLPALADCEFLGELGLTGELRAIDGVLPAALAAADAGRRLVVPAGNGAEAALASRVEARTARTL
SEVCAMLCERASLPRAVAPPLARAPELDMRDVRGQAQARRALEIAAAGGHHLLLIGPPGCGKTLLASRLPGLLPEAGEDE
ALETAAIASVGGGGHGRALDPARWRQRPFRAPHHTASAVALVGGGADPRPGEISLAHHGVLFLDELPEWERRALEVLREP
LESGVVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDSSARCRCTEDVIRRYRARISGPLLDRIDLHIEVPRLPPSALRP
DQPEGEASAAIRERVSAARCRQTERSGKINARLDQAETGRHCRLSEADQALLERAVDGLQLSARSMHRILRVARTIADLA
GAERIGTAHLSEAIGYRRADRNSGTRAA

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=67463 LEN_RS23270 WP_096382286.1 5866686..5868212(+) (comM) [Lysobacter enzymogenes strain M497-1]
ATGAACCTGGCGCTCGTGCACAGCCGTGCGCGAACGGGGGTGCGTGCGCCGGCGGTACGGGTCGAGGTGCATCTGGGCGG
CGGCCTGCCGTGCATGAACATCGTCGGCCTGCCCGAAGCCGCAGTGCGCGAAGCCAAGGATCGGGTACGCGCGGCGATCG
CCTCGGCGCAGTACGAATTCCCGCAGCGGCGCATCACCGTCAATCTCGCTCCGGCCGATCTGCCCAAGGACGGCGGCCGC
TACGATCTGGCCATTGCGCTCGGCATCCTCGCCGCGAGTGGGCAACTGCCGTTGCCGGCGCTGGCCGATTGCGAATTCCT
CGGCGAGCTCGGCCTCACCGGCGAACTGCGCGCGATCGACGGCGTGCTGCCGGCAGCGCTGGCCGCGGCCGACGCCGGGC
GCCGACTGGTGGTGCCGGCCGGCAACGGCGCCGAAGCCGCGCTGGCCAGCCGGGTCGAGGCGCGCACCGCGCGCACGCTG
TCGGAAGTCTGCGCGATGCTGTGCGAACGCGCGTCGCTGCCGCGCGCGGTCGCCCCGCCGCTGGCGCGCGCGCCCGAGCT
GGACATGCGCGACGTGCGCGGCCAGGCGCAGGCGCGGCGCGCGCTGGAGATCGCCGCGGCCGGCGGCCACCATCTGCTGC
TGATCGGCCCGCCCGGCTGCGGCAAGACCTTGCTGGCCTCGCGCCTGCCCGGCCTGCTGCCCGAAGCCGGCGAGGACGAA
GCGCTGGAAACCGCCGCGATCGCCTCGGTCGGCGGCGGCGGCCACGGCCGCGCGCTGGATCCGGCGCGCTGGCGTCAGCG
TCCGTTCCGCGCGCCGCACCACACCGCCAGCGCGGTGGCGCTGGTCGGCGGCGGCGCCGATCCGCGGCCGGGCGAAATCT
CGCTGGCGCACCACGGCGTGCTGTTCCTCGACGAGTTGCCCGAGTGGGAACGGCGCGCGCTGGAAGTGCTGCGCGAACCC
TTGGAATCGGGCGTAGTCACGGTATCGCGCGCGGCGCGCAGCGCCGAGTTTCCGGCGCGGTTCCAGTTGGTCGCGGCGAT
GAATCCCTGCCCCTGCGGCTGGGCCGGCGACAGCAGCGCGCGCTGCCGTTGCACCGAAGACGTCATCCGCCGTTACCGCG
CGCGCATCTCCGGCCCGTTGCTGGATCGCATCGACCTGCATATCGAAGTGCCGCGGCTGCCGCCGTCGGCGCTGCGGCCG
GACCAGCCCGAAGGCGAAGCCAGTGCCGCGATCCGCGAACGCGTGAGCGCCGCCCGATGCAGGCAGACCGAGCGCAGCGG
CAAGATCAACGCGCGCCTGGACCAGGCCGAAACCGGCCGGCACTGCCGCCTGAGCGAAGCCGATCAAGCCTTGCTGGAAC
GCGCGGTCGACGGCCTGCAATTGTCGGCGCGCTCGATGCACCGGATCCTGCGGGTGGCGCGCACCATCGCCGACCTCGCC
GGGGCCGAGCGCATCGGCACCGCGCACCTCAGCGAAGCCATCGGTTACCGGCGCGCCGATCGCAACAGCGGGACCCGGGC
CGCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.672

99.016

0.541
  comM Haemophilus influenzae Rd KW20

53.479

99.016

0.53
  comM Vibrio campbellii strain DS40M4

53.28

99.016

0.528
  comM Glaesserella parasuis strain SC1401

52.559

100

0.526
  comM Legionella pneumophila str. Paris

51.297

98.622

0.506
  comM Legionella pneumophila strain ERS1305867

51.297

98.622

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.814

100

0.451

Multiple sequence alignment