Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SVA_RS00185 Genome accession   NZ_AP014936
Coordinates   42134..43642 (-) Length   502 a.a.
NCBI ID   WP_096457074.1    Uniprot ID   A0A1B4UZP5
Organism   Sulfurifustis variabilis strain skN76     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 37134..48642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SVA_RS00165 (SVA_0033) odhB 38208..39479 (+) 1272 WP_096457068.1 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase -
  SVA_RS00170 (SVA_0034) lpdA 39573..41024 (+) 1452 WP_096457071.1 dihydrolipoyl dehydrogenase -
  SVA_RS00180 (SVA_0036) - 41578..42066 (+) 489 WP_197703300.1 c-type cytochrome -
  SVA_RS00185 (SVA_0037) comM 42134..43642 (-) 1509 WP_096457074.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SVA_RS00190 (SVA_0038) - 43675..43911 (-) 237 WP_096457077.1 accessory factor UbiK family protein -
  SVA_RS00195 (SVA_0039) - 44241..44954 (+) 714 WP_169923911.1 TorF family putative porin -
  SVA_RS00200 (SVA_0040) glnK 45010..45348 (+) 339 WP_096457083.1 P-II family nitrogen regulator -
  SVA_RS00205 (SVA_0041) - 45366..46727 (+) 1362 WP_096462755.1 ammonium transporter -
  SVA_RS00210 (SVA_0042) - 46776..48194 (-) 1419 WP_096457086.1 DUF945 family protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 53675.54 Da        Isoelectric Point: 8.2295

>NTDB_id=67416 SVA_RS00185 WP_096457074.1 42134..43642(-) (comM) [Sulfurifustis variabilis strain skN76]
MGLAVVHSRAQVGIEAPAVTVEVHLANGLPSLSIVGLPEAAVKEAKDRVRAALLNARFEFPARRITINLAPADLPKEGAR
FDLPIALGILAASEQIPGSALAGHEFIGELALTGELRPVRGALSASLAARSEPRALVVPEPNAPEAALVDGVRVLGARHL
LEVTAHFAAERHLVASQATKPPASRGEAADLGDIRGQHQAKRALEIAAAGAHSLLLVGPPGTGKTMLASRLPGILPPLTD
HEALEVAAIHSAYKGFTVAQWKERPFRAPHHTASGVALVGGGSHPRPGEISLAHHGVLFLDELPEFDRSVLEVLREPLES
GTITISRAARQAEFPARFQLVAAMNPCPCGHHGDTSGRCRCTEERIRTYRARVSGPLLDRIDMHVEVPSVPRDVLLSRTA
AAAEGSQSVQARVTAARERQLARSGCANQTLSNKQVDEFCRIDTACQQLLEQAMLRLRLSARAYHRILKVARTIADLAGE
ENIRPEHLAEAIQYRAMDRPGV

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=67416 SVA_RS00185 WP_096457074.1 42134..43642(-) (comM) [Sulfurifustis variabilis strain skN76]
ATGGGACTCGCCGTCGTGCACAGCCGCGCGCAGGTCGGCATCGAAGCGCCGGCGGTAACGGTGGAAGTCCACCTCGCGAA
CGGGCTGCCGAGTCTCTCCATCGTCGGACTGCCCGAGGCGGCCGTGAAAGAGGCCAAGGATCGGGTGCGGGCGGCGCTGC
TCAATGCACGCTTCGAGTTTCCGGCGAGGCGCATCACCATCAATCTGGCGCCCGCCGATCTGCCCAAGGAAGGCGCGCGC
TTCGATCTACCCATCGCCCTCGGCATCCTCGCCGCCTCGGAGCAGATACCCGGTTCGGCCCTTGCAGGCCACGAGTTCAT
CGGCGAGCTGGCGTTGACGGGCGAGCTGCGCCCGGTACGGGGCGCGCTGAGCGCGAGCCTGGCCGCGCGATCAGAGCCGC
GTGCGCTGGTCGTGCCCGAGCCGAACGCCCCGGAAGCGGCACTGGTGGACGGCGTCCGGGTGCTCGGCGCGCGTCACCTG
CTCGAGGTCACCGCCCACTTCGCCGCGGAGCGCCACCTGGTTGCGTCTCAGGCGACGAAACCCCCGGCCAGCCGTGGGGA
GGCTGCCGATCTGGGCGACATCCGGGGTCAGCATCAGGCGAAGCGCGCGCTCGAGATCGCGGCGGCAGGTGCCCACAGCC
TGCTGCTCGTCGGACCTCCCGGGACGGGGAAGACCATGCTCGCCAGTCGCCTGCCCGGGATCCTCCCGCCTCTTACTGAC
CACGAGGCGCTCGAAGTGGCCGCGATCCATTCCGCGTACAAGGGGTTTACGGTGGCGCAGTGGAAGGAGCGGCCGTTTCG
CGCGCCGCACCACACGGCCTCCGGAGTCGCTCTCGTAGGCGGCGGCAGCCACCCCCGGCCAGGCGAAATCTCGCTCGCGC
ACCACGGCGTTCTGTTTCTCGACGAGCTTCCGGAGTTCGATCGATCCGTGCTCGAGGTGCTGCGCGAGCCGCTCGAGTCG
GGCACGATTACGATTTCGCGGGCCGCGCGCCAAGCGGAGTTCCCCGCGCGGTTCCAGCTCGTCGCCGCGATGAACCCCTG
CCCGTGCGGGCACCACGGCGACACCTCGGGCCGCTGTCGCTGCACCGAGGAACGCATCCGCACGTACCGCGCAAGGGTCT
CGGGCCCGCTGCTTGATCGCATCGACATGCACGTGGAGGTGCCCTCGGTCCCGAGGGACGTCCTCCTTTCGCGCACGGCG
GCGGCCGCCGAGGGATCGCAGTCGGTGCAGGCGCGCGTGACGGCCGCGCGCGAGCGTCAGCTCGCGCGCAGCGGCTGCGC
CAACCAGACGCTGAGCAACAAGCAAGTGGACGAGTTCTGCCGCATCGATACGGCGTGTCAGCAGCTGCTCGAGCAGGCGA
TGCTGCGGTTGCGGCTGAGTGCGCGCGCCTACCACCGCATCCTGAAGGTCGCGCGCACCATCGCGGACCTTGCCGGTGAG
GAGAACATTCGCCCCGAGCACCTGGCTGAAGCAATCCAGTACCGGGCCATGGACCGGCCCGGCGTGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B4UZP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.2

99.602

0.57
  comM Vibrio campbellii strain DS40M4

56.6

99.602

0.564
  comM Haemophilus influenzae Rd KW20

55.159

100

0.554
  comM Glaesserella parasuis strain SC1401

54.438

100

0.55
  comM Legionella pneumophila str. Paris

52.218

98.805

0.516
  comM Legionella pneumophila strain ERS1305867

52.218

98.805

0.516
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.047

100

0.476

Multiple sequence alignment