Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   lgb_RS00740 Genome accession   NZ_CP094882
Coordinates   149791..150207 (+) Length   138 a.a.
NCBI ID   WP_019293010.1    Uniprot ID   -
Organism   Lactococcus petauri strain B1726     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 144791..155207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  lgb_RS00715 (lgb_00141) guaB 145621..147102 (+) 1482 WP_003133714.1 IMP dehydrogenase -
  lgb_RS00720 (lgb_00142) rpsU 147228..147404 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  lgb_RS00725 (lgb_00143) comGA 147590..148534 (+) 945 WP_019293012.1 competence type IV pilus ATPase ComGA Machinery gene
  lgb_RS00730 (lgb_00144) comGB 148473..149492 (+) 1020 WP_256777882.1 competence type IV pilus assembly protein ComGB Machinery gene
  lgb_RS00735 (lgb_00145) comYC 149511..149816 (+) 306 WP_029345656.1 competence type IV pilus major pilin ComGC Machinery gene
  lgb_RS00740 comGD 149791..150207 (+) 417 WP_019293010.1 competence type IV pilus minor pilin ComGD Machinery gene
  lgb_RS00745 comGE 150239..150472 (+) 234 WP_019293009.1 competence type IV pilus minor pilin ComGE -
  lgb_RS00750 (lgb_00147) comGF 150459..150893 (+) 435 WP_029345654.1 competence type IV pilus minor pilin ComGF -
  lgb_RS00755 (lgb_00148) - 151125..151970 (+) 846 WP_019336001.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  lgb_RS00760 (lgb_00149) - 152041..152925 (-) 885 WP_019293007.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15758.38 Da        Isoelectric Point: 9.9391

>NTDB_id=673920 lgb_RS00740 WP_019293010.1 149791..150207(+) (comGD) [Lactococcus petauri strain B1726]
MQNVMYRIKALTLLESLLVLFLCSSVLFLFSGSVKQSVRIARAEIFILQFERLYKDTQRMAGLKGQQQTLSASNGTLYSQ
EEVLKVPEEVEINDFSITFDQKSGNSSLQKITIFLPYQKKTISYQLEIGSGKYKKKIT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=673920 lgb_RS00740 WP_019293010.1 149791..150207(+) (comGD) [Lactococcus petauri strain B1726]
ATGCAAAACGTAATGTATCGAATTAAAGCTTTGACCTTACTAGAGAGTTTACTAGTCCTTTTCCTTTGCTCTTCTGTTCT
TTTTCTCTTTTCAGGTTCGGTCAAACAAAGTGTCAGGATAGCACGCGCAGAGATTTTTATTTTACAATTTGAGCGACTTT
ATAAGGATACCCAGCGTATGGCAGGATTAAAGGGACAGCAACAGACATTGAGTGCGAGTAATGGCACACTATACAGCCAA
GAGGAAGTGCTGAAAGTTCCAGAGGAGGTTGAAATAAATGATTTTTCTATTACTTTTGATCAAAAATCAGGCAACTCGAG
CCTACAAAAAATTACAATATTTCTTCCTTATCAGAAAAAAACCATCTCTTATCAATTGGAAATTGGAAGCGGGAAATATA
AGAAAAAAATCACTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

49.275

100

0.493
  comYD Streptococcus mutans UA140

42.424

95.652

0.406
  comYD Streptococcus mutans UA159

42.424

95.652

0.406
  comGD/cglD Streptococcus mitis SK321

41.085

93.478

0.384
  comGD/cglD Streptococcus pneumoniae TIGR4

40.31

93.478

0.377
  comGD/cglD Streptococcus mitis NCTC 12261

39.231

94.203

0.37
  comGD/cglD Streptococcus pneumoniae Rx1

38.76

93.478

0.362
  comGD/cglD Streptococcus pneumoniae D39

38.76

93.478

0.362
  comGD/cglD Streptococcus pneumoniae R6

38.76

93.478

0.362