Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MTP21_RS14765 Genome accession   NZ_CP094880
Coordinates   3209333..3210856 (-) Length   507 a.a.
NCBI ID   WP_243975458.1    Uniprot ID   -
Organism   Vibrio natriegens strain WPAGA4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3204333..3215856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP21_RS14745 - 3205561..3206547 (+) 987 WP_118119838.1 serine/threonine protein kinase -
  MTP21_RS14750 - 3206581..3207183 (+) 603 WP_243975451.1 thiol:disulfide interchange protein DsbA/DsbL -
  MTP21_RS14755 - 3207227..3208105 (-) 879 WP_243975454.1 acyltransferase -
  MTP21_RS14760 - 3208345..3209301 (+) 957 WP_243975456.1 DUF2860 domain-containing protein -
  MTP21_RS14765 comM 3209333..3210856 (-) 1524 WP_243975458.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MTP21_RS14770 ilvG 3211324..3212970 (+) 1647 WP_020333557.1 acetolactate synthase 2 catalytic subunit -
  MTP21_RS14775 ilvM 3212982..3213266 (+) 285 WP_014233403.1 acetolactate synthase 2 small subunit -
  MTP21_RS14780 ilvD 3213434..3215275 (+) 1842 WP_020333559.1 dihydroxy-acid dehydratase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55131.15 Da        Isoelectric Point: 9.0569

>NTDB_id=673910 MTP21_RS14765 WP_243975458.1 3209333..3210856(-) (comM) [Vibrio natriegens strain WPAGA4]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRPVKGVLPAALAASKFQRHLVVPNVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLHKSPKRKTPQSHNRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
DEAMETASVASLTQSEINEHNWKIRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLSEGGDR
GEPTVVVKERVNDARQQMLNRSGKVNALLGSREIEAFCPLQKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGEER
IERSHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=673910 MTP21_RS14765 WP_243975458.1 3209333..3210856(-) (comM) [Vibrio natriegens strain WPAGA4]
ATGGGGCTGGCAATCATTCATAGTCGGGCAAGTGTCGGTGTACAAGCGCCGTCAGTTAGTGTGGAAGTACATATTAGTAA
CGGTATGCCGGGCTTTACTCTGGTTGGGCTGCCAGAAACCACGGTAAAAGAATCAAAGGATCGTGTACGTAGTGCCATTA
TCAATTCCAATTTTCAATTTCCTGCCAAACGCATTACGGTCAACTTAGCTCCGGCGGATTTACCCAAAGAGGGCGGACGC
TTTGACTTACCCATAGCGCTGGGTATTTTGGCCGCTTCAGAGCAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
CGGTGAGTTAGCATTGTCTGGAGGCTTAAGGCCTGTAAAAGGGGTGCTACCTGCTGCGCTCGCTGCAAGCAAGTTTCAGC
GCCATTTGGTCGTGCCAAATGTGAATGGTGATCAGGCGGCGCTGGTGGGTAAAGAACAGCATAAATCCGCTCAGTCGTTA
CTTGAGGTGTGTGCTGAATTGTGTGGTCAACATCGGCTTAATTTGCATAAATCACCTAAGCGTAAAACACCACAAAGCCA
TAACCGAGATTTACAGGACATCATTGGCCAGCAACAGGGTAAGCGAGCGCTTGAGATTGCTGCAGCAGGAAACCATAACT
TACTTTTCCTTGGCCCGCCGGGAACAGGAAAAACCATGTTAGCGTCGCGCTTATGCGATTTGTTACCTGAAATGAGTGAT
GATGAAGCGATGGAAACCGCATCCGTCGCGTCATTAACACAAAGCGAAATCAATGAACATAACTGGAAGATACGGCCGTT
TCGTTCTCCACACCATTCTAGTTCGATGGCGGCTTTAGTCGGCGGAGGTTCGGTTCCGAGGCCGGGAGAAATTTCTCTGG
CTCATAATGGCTTGTTGTTTTTGGATGAAATGCCGGAGTTCGATCGTAAGGTGCTGGATTCGCTGCGAGAACCGCTGGAG
TCGGGCGAAATTATCATCTCTCGGGCTCAGGGCAAAACCCGATTTCCTGCCCGCTTTCAGCTGGTGGGCGCTCTCAACCC
CAGCCCGACTGGCTACTACGAAGGCAATCAGGCACGCACTAACCCACAAGCCATTCTGCGTTATTTAGGTCGTCTGTCGG
GACCGCTACTGGATCGATTCGATATGTCTCTGGAAATTCCTGCTTTGCCAAAGGGCACATTATCTGAGGGTGGGGACCGA
GGTGAGCCAACAGTGGTTGTGAAAGAGCGCGTTAATGACGCTCGTCAGCAGATGTTAAATCGCAGCGGTAAGGTGAACGC
TTTGCTGGGTAGTCGTGAGATAGAAGCGTTTTGCCCATTACAAAAAAGTGATGCTGAGTTTCTGGAGACAGCCTTACACA
GACTGGGACTGTCCATTCGTGCGTATCACCGAATCATTAAAGTTGCCCGCACTATTGCTGATCTGGATGGGGAAGAGCGG
ATTGAGCGCTCCCATCTGGCGGAAGCCCTTGGATATCGAGCAATGGACCGATTACTGAAACAGCTTACTGCTCAGGCTGT
GTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

93.688

100

0.937
  comM Vibrio cholerae strain A1552

84.418

100

0.844
  comM Haemophilus influenzae Rd KW20

65.286

100

0.653
  comM Glaesserella parasuis strain SC1401

64.314

100

0.647
  comM Legionella pneumophila str. Paris

49.597

97.83

0.485
  comM Legionella pneumophila strain ERS1305867

49.597

97.83

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.094

100

0.442