Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MTP21_RS12840 Genome accession   NZ_CP094880
Coordinates   2811696..2812235 (-) Length   179 a.a.
NCBI ID   WP_014233117.1    Uniprot ID   A0AAN1CWJ2
Organism   Vibrio natriegens strain WPAGA4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2806696..2817235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP21_RS12820 - 2807020..2807352 (-) 333 WP_243975038.1 MSHA biogenesis protein MshK -
  MTP21_RS12825 gspM 2807345..2807995 (-) 651 WP_065300270.1 type II secretion system protein GspM -
  MTP21_RS12830 - 2807992..2809437 (-) 1446 WP_243975048.1 MSHA biogenesis protein MshI -
  MTP21_RS12835 csrD 2809449..2811458 (-) 2010 WP_065297434.1 RNase E specificity factor CsrD -
  MTP21_RS12840 ssb 2811696..2812235 (-) 540 WP_014233117.1 single-stranded DNA-binding protein Machinery gene
  MTP21_RS12845 qstR 2812513..2813157 (+) 645 WP_243975050.1 LuxR C-terminal-related transcriptional regulator Regulator
  MTP21_RS12850 galU 2813337..2814209 (+) 873 WP_014233119.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  MTP21_RS12855 uvrA 2814358..2817180 (+) 2823 WP_243975060.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19685.83 Da        Isoelectric Point: 5.2257

>NTDB_id=673900 MTP21_RS12840 WP_014233117.1 2811696..2812235(-) (ssb) [Vibrio natriegens strain WPAGA4]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQAPQQGGWGQPQQPAQPQYNAPQQQAPKQSAPQ
QPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=673900 MTP21_RS12840 WP_014233117.1 2811696..2812235(-) (ssb) [Vibrio natriegens strain WPAGA4]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAACCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCAACCTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACTG
AGTGGCACCGAGTTGTGCTGTTTGGCAAACTTGCGGAAGTTGCTGGCGAATACCTACGTAAAGGCTCACAAGTTTACGTT
GAAGGACAACTTCAAACGCGTAAATGGCAAGATCAGAGTGGTCAAGACCGTTACTCAACTGAAGTTGTGGTTCAGGGCTT
CAATGGCGTAATGCAAATGCTGGGTGGTCGCGCTCAAGGTGGCGCTCCTGCTATGGGTGGCCAGGCACCTCAGCAAGGTG
GTTGGGGTCAGCCTCAGCAACCAGCTCAGCCGCAATACAATGCGCCTCAGCAACAGGCTCCAAAGCAATCTGCTCCACAG
CAGCCTCAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.328

100

0.821
  ssb Glaesserella parasuis strain SC1401

56.614

100

0.598
  ssb Neisseria meningitidis MC58

46.667

100

0.469
  ssb Neisseria gonorrhoeae MS11

46.667

100

0.469