Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   MTP21_RS12845 Genome accession   NZ_CP094880
Coordinates   2812513..2813157 (+) Length   214 a.a.
NCBI ID   WP_243975050.1    Uniprot ID   -
Organism   Vibrio natriegens strain WPAGA4     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2807513..2818157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP21_RS12830 - 2807992..2809437 (-) 1446 WP_243975048.1 MSHA biogenesis protein MshI -
  MTP21_RS12835 csrD 2809449..2811458 (-) 2010 WP_065297434.1 RNase E specificity factor CsrD -
  MTP21_RS12840 ssb 2811696..2812235 (-) 540 WP_014233117.1 single-stranded DNA-binding protein Machinery gene
  MTP21_RS12845 qstR 2812513..2813157 (+) 645 WP_243975050.1 LuxR C-terminal-related transcriptional regulator Regulator
  MTP21_RS12850 galU 2813337..2814209 (+) 873 WP_014233119.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  MTP21_RS12855 uvrA 2814358..2817180 (+) 2823 WP_243975060.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24445.44 Da        Isoelectric Point: 9.9863

>NTDB_id=673901 MTP21_RS12845 WP_243975050.1 2812513..2813157(+) (qstR) [Vibrio natriegens strain WPAGA4]
MKKSAYARKLFLISMEDNAPQKVAALEKYIEIGIPVISTDALMEAKPKHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VIFNVPKRLTTDELLSFGQLKGVFYADESLERIGEGLKGIINGQNWLPRNVSSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQNGASNSRMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=673901 MTP21_RS12845 WP_243975050.1 2812513..2813157(+) (qstR) [Vibrio natriegens strain WPAGA4]
ATGAAAAAGTCAGCTTACGCCAGAAAGCTATTTCTGATCAGTATGGAAGATAATGCGCCCCAAAAGGTAGCAGCACTGGA
GAAGTACATCGAGATCGGTATCCCAGTGATCTCGACGGATGCTTTAATGGAAGCGAAGCCGAAACATCGTAATAAAATCT
TGCTCATCGATTTCAGTGAACATAAATCGCTTGTTCAGTCGATTAAGAACTTGCCACTGGTGTGGAAAAACTTTGAAACA
GTGATTTTTAATGTCCCAAAACGCCTGACTACGGATGAGCTGCTCTCTTTCGGCCAGCTTAAAGGCGTATTCTATGCCGA
CGAATCGCTTGAACGAATTGGGGAAGGATTAAAAGGCATCATTAATGGCCAAAACTGGTTACCTCGCAATGTGTCCAGCC
AGCTGCTTCACTACTACCGCAATGTGATCAATACCCATACCGCGCCCGCGACCGTGGATCTTACCATTCGGGAATTACAA
GTGTTGCGCTGTCTTCAAAATGGGGCATCCAATAGCCGAATGGCAGAAGAGTTGTTTGTGAGTGAGTTTACGATTAAGTC
TCACCTGTACCAGATTTTTAAAAAGCTCTCGGTGAAAAACCGCGTACAAGCGATTGCTTGGGCTGATCAGAATCTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

90.654

100

0.907
  qstR Vibrio campbellii strain DS40M4

87.85

100

0.879
  qstR Vibrio cholerae strain A1552

54.419

100

0.547