Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MT343_RS19180 Genome accession   NZ_CP094879
Coordinates   4249053..4250567 (-) Length   504 a.a.
NCBI ID   WP_145467449.1    Uniprot ID   A0A558NPY6
Organism   Thalassolituus sp. C2-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4244053..4255567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MT343_RS19165 rep 4244830..4246857 (-) 2028 WP_145467453.1 DNA helicase Rep -
  MT343_RS19170 - 4247302..4248825 (+) 1524 WP_186435823.1 EAL domain-containing protein -
  MT343_RS19175 - 4248807..4248971 (-) 165 WP_186435822.1 hypothetical protein -
  MT343_RS19180 comM 4249053..4250567 (-) 1515 WP_145467449.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MT343_RS19185 - 4250718..4253408 (+) 2691 WP_145467447.1 S8 family serine peptidase -
  MT343_RS19190 - 4253496..4253912 (+) 417 WP_145467445.1 hypothetical protein -
  MT343_RS19195 - 4253920..4254543 (-) 624 WP_145467444.1 SCO family protein -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 53855.55 Da        Isoelectric Point: 7.1078

>NTDB_id=673868 MT343_RS19180 WP_145467449.1 4249053..4250567(-) (comM) [Thalassolituus sp. C2-1]
MSLARVFTRAQLGIDAPPVIVEVHLSSGLPSLSLVGLPETAVKESKDRVRSALMNAQFEFPAKRITINLSPADLPKEGGR
YDLAIALGILAASGQIPATALDGHEFIGELSLGGDLQPVPGVLPCALQAARAGNVLVLPQANASEAALCSQGEFRSAASL
LEVTAYLHGQQSLAAVTAGNAVPAGRPQQADLTDVRGQPQARRALEIAAAGQHNLLFIGPPGTGKTMLASRLPGILPPMS
EEEALVSASVYSISSQPSQWQDQWRVRPFRAPHHTASGVALVGGGTTPKPGEISLAHGGVLFLDELPEFSRKVLDVLREP
LESGRIVISRANRSITYPARFQLIAAMNPCPCGYFGDPAGRCHCTQEQIRRYQGQTSGPLLDRIDLHVEVPPIATALLQQ
APAGESSAAVQQRVMAAQALQQQRQGCANAELSPTLREQVCVLHEEDQHWLLAAIERLQLSARGYHRLLNIARTIADLDA
QPAIGRVHLLEALGYRTLDRYRQG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=673868 MT343_RS19180 WP_145467449.1 4249053..4250567(-) (comM) [Thalassolituus sp. C2-1]
ATGTCGTTAGCCCGCGTATTTACCCGCGCGCAGCTGGGTATTGATGCTCCGCCGGTCATTGTTGAGGTGCACCTGTCCAG
TGGCCTGCCGTCGCTCAGTCTGGTGGGGTTGCCGGAAACCGCCGTTAAAGAAAGTAAAGACCGCGTGCGTTCTGCCCTGA
TGAACGCGCAGTTTGAATTCCCCGCCAAGCGCATCACCATCAATCTGTCTCCTGCTGATTTGCCAAAAGAAGGTGGTCGC
TATGATCTGGCCATTGCGCTGGGCATTCTTGCGGCTTCCGGCCAGATTCCGGCCACCGCTCTGGATGGTCATGAATTTAT
CGGTGAGTTGAGTCTGGGCGGAGATTTACAGCCGGTACCCGGAGTATTGCCCTGTGCCCTGCAGGCGGCCCGTGCGGGTA
ATGTGCTGGTGTTACCCCAGGCCAATGCCAGCGAAGCGGCACTGTGTTCTCAGGGTGAATTCCGCAGCGCCGCCAGCCTG
CTGGAGGTGACCGCTTATCTGCATGGGCAACAGAGTCTGGCAGCTGTAACAGCGGGCAATGCTGTCCCCGCAGGGCGTCC
GCAACAGGCCGACTTAACCGATGTGCGCGGCCAGCCACAGGCGCGGCGGGCGCTGGAAATTGCCGCAGCAGGTCAGCATA
ACCTGCTGTTTATCGGCCCGCCGGGCACCGGCAAAACCATGCTGGCCAGCCGTCTGCCCGGCATTTTGCCGCCCATGAGT
GAAGAAGAAGCGCTGGTATCGGCGTCGGTTTATTCCATCAGCAGCCAGCCGTCGCAATGGCAGGATCAGTGGCGCGTGCG
GCCTTTCCGCGCGCCGCACCATACCGCATCCGGAGTGGCTCTGGTCGGTGGTGGCACAACCCCCAAGCCCGGTGAAATCT
CACTGGCCCATGGCGGTGTGCTGTTTCTGGATGAGTTACCGGAATTCAGCCGCAAAGTGCTGGATGTGCTGCGTGAACCG
CTGGAAAGCGGACGTATTGTTATCAGCCGTGCCAACCGTTCGATCACCTATCCGGCGCGTTTTCAGCTGATTGCGGCGAT
GAACCCCTGCCCCTGTGGTTATTTTGGTGATCCGGCCGGACGCTGCCACTGTACCCAGGAGCAGATCCGCCGCTATCAGG
GACAGACCTCGGGGCCGCTGCTCGACCGTATTGATCTGCACGTTGAAGTGCCTCCCATTGCCACCGCTTTGCTGCAGCAG
GCTCCGGCCGGTGAAAGCAGCGCGGCAGTACAGCAGCGGGTGATGGCGGCGCAGGCGCTGCAGCAACAGCGCCAGGGGTG
CGCTAATGCCGAGCTGAGCCCCACACTGCGCGAGCAGGTCTGTGTTCTTCATGAAGAGGATCAGCACTGGCTGCTGGCGG
CGATTGAACGGCTGCAGCTGTCGGCCCGGGGTTATCACCGTCTGCTGAATATTGCCCGCACCATTGCTGACCTGGATGCC
CAGCCGGCCATCGGTCGTGTGCATCTGCTCGAAGCACTGGGCTACCGCACGCTGGATCGTTACCGGCAGGGGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A558NPY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.687

99.405

0.563
  comM Vibrio campbellii strain DS40M4

55.159

100

0.552
  comM Haemophilus influenzae Rd KW20

54.438

100

0.548
  comM Glaesserella parasuis strain SC1401

54.043

100

0.544
  comM Legionella pneumophila str. Paris

51.205

98.81

0.506
  comM Legionella pneumophila strain ERS1305867

51.205

98.81

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.85

100

0.46