Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   OH735_RS11705 Genome accession   NZ_CP109297
Coordinates   2471829..2472257 (-) Length   142 a.a.
NCBI ID   WP_406381310.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01618     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2466829..2477257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH735_RS11690 (OH735_11665) - 2467866..2468078 (-) 213 Protein_2316 short-chain dehydrogenase -
  OH735_RS11695 (OH735_11670) - 2468126..2469010 (-) 885 WP_406381308.1 YceI family protein -
  OH735_RS11700 (OH735_11675) - 2469223..2471832 (-) 2610 WP_406381309.1 ComEC/Rec2 family competence protein -
  OH735_RS11705 comEA/celA/cilE 2471829..2472257 (-) 429 WP_406381310.1 helix-hairpin-helix domain-containing protein Machinery gene
  OH735_RS11710 (OH735_11685) - 2473234..2474079 (-) 846 WP_406381311.1 DegV family protein -
  OH735_RS11715 (OH735_11690) - 2474188..2474949 (-) 762 WP_406386529.1 hypothetical protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 14290.13 Da        Isoelectric Point: 7.3201

>NTDB_id=673370 OH735_RS11705 WP_406381310.1 2471829..2472257(-) (comEA/celA/cilE) [Streptomyces sp. NBC_01618]
MSGKVRLPGIHQLPSGARVADAIRAAGGVRPGVDLAGLNRARVLMDGEQIVVGAPTGPPVVGGTGGTATGGTGSGGTTTG
PVSLNQATAEQLDSLPGVGPVLAQHIVDYRTQHGGFRSVDELREVNGIGDRRFADLQPLVVP

Nucleotide


Download         Length: 429 bp        

>NTDB_id=673370 OH735_RS11705 WP_406381310.1 2471829..2472257(-) (comEA/celA/cilE) [Streptomyces sp. NBC_01618]
GTGAGCGGGAAGGTGCGACTGCCGGGGATCCATCAACTGCCGTCCGGCGCACGGGTCGCCGACGCGATCCGGGCCGCGGG
CGGAGTCCGGCCCGGTGTCGACCTCGCCGGGCTCAACCGGGCGCGGGTGCTCATGGACGGGGAGCAGATCGTGGTGGGCG
CTCCAACGGGCCCTCCGGTCGTGGGCGGGACGGGAGGAACCGCAACAGGCGGCACCGGCAGCGGCGGCACCACAACAGGA
CCGGTCAGCCTCAACCAGGCGACCGCCGAACAACTCGACTCCCTGCCCGGCGTCGGTCCGGTTCTCGCCCAGCACATTGT
CGACTACCGCACCCAGCACGGCGGTTTCCGTTCCGTCGACGAACTCCGCGAAGTCAACGGGATCGGCGATCGCCGGTTCG
CCGACCTCCAACCTCTGGTGGTGCCGTGA

Domains

Predicted by InterProScan.

SLBB domain (SLBB)

(2-52)

Helix-hairpin-helix motif (HHH_3)

(81-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

39.007

99.296

0.387
  comEA/celA/cilE Streptococcus pneumoniae Rx1

39.007

99.296

0.387
  comEA/celA/cilE Streptococcus pneumoniae D39

39.007

99.296

0.387
  comEA/celA/cilE Streptococcus pneumoniae R6

39.007

99.296

0.387
  comEA Streptococcus thermophilus LMD-9

40.299

94.366

0.38
  comEA/celA/cilE Streptococcus mitis NCTC 12261

36.62

100

0.366