Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   MUA95_RS06195 Genome accession   NZ_CP094809
Coordinates   1281762..1282073 (+) Length   103 a.a.
NCBI ID   WP_262626834.1    Uniprot ID   -
Organism   Staphylococcus agnetis strain IVB6197     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1276762..1287073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA95_RS06165 (MUA95_06155) - 1277538..1277741 (+) 204 WP_037567684.1 YqgQ family protein -
  MUA95_RS06170 (MUA95_06160) - 1277738..1278724 (+) 987 WP_060551128.1 ROK family glucokinase -
  MUA95_RS06175 (MUA95_06165) - 1278725..1279036 (+) 312 WP_037567688.1 MTH1187 family thiamine-binding protein -
  MUA95_RS06180 (MUA95_06170) - 1279051..1279674 (+) 624 WP_262625002.1 MBL fold metallo-hydrolase -
  MUA95_RS06185 (MUA95_06175) comGA 1279731..1280705 (+) 975 WP_060551125.1 competence type IV pilus ATPase ComGA Machinery gene
  MUA95_RS06190 (MUA95_06180) comGB 1280713..1281741 (+) 1029 WP_262626075.1 competence type IV pilus assembly protein ComGB -
  MUA95_RS06195 (MUA95_06185) comGC 1281762..1282073 (+) 312 WP_262626834.1 competence type IV pilus major pilin ComGC Machinery gene
  MUA95_RS06200 (MUA95_06190) comGD 1282063..1282494 (+) 432 WP_262617576.1 competence type IV pilus minor pilin ComGD -
  MUA95_RS06205 (MUA95_06195) - 1282686..1283168 (+) 483 WP_262617577.1 competence type IV pilus minor pilin ComGF -
  MUA95_RS06210 (MUA95_06200) - 1283152..1283349 (+) 198 WP_262619525.1 hypothetical protein -
  MUA95_RS06215 (MUA95_06205) - 1283288..1283857 (+) 570 WP_262619485.1 shikimate kinase -
  MUA95_RS06220 (MUA95_06210) gcvT 1284009..1285100 (+) 1092 WP_262617578.1 glycine cleavage system aminomethyltransferase GcvT -
  MUA95_RS06225 (MUA95_06215) gcvPA 1285112..1286461 (+) 1350 WP_262626076.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11476.63 Da        Isoelectric Point: 9.0689

>NTDB_id=673015 MUA95_RS06195 WP_262626834.1 1281762..1282073(+) (comGC) [Staphylococcus agnetis strain IVB6197]
MIHKLKNKKGFTLIEMLLVLLIISVLLILIIPNIAIQSEHIQKTGCAAQLKLVDSQIEAYTLKYNRKPATIEELVQEGYI
KENQKNCKSGESITIRGGEAIAS

Nucleotide


Download         Length: 312 bp        

>NTDB_id=673015 MUA95_RS06195 WP_262626834.1 1281762..1282073(+) (comGC) [Staphylococcus agnetis strain IVB6197]
ATGATTCACAAGCTAAAAAATAAAAAAGGATTCACGTTAATTGAAATGCTGCTTGTATTACTGATTATTAGCGTTTTATT
AATTTTAATTATCCCAAACATAGCTATACAATCTGAACACATTCAAAAAACAGGCTGTGCTGCACAACTTAAACTTGTTG
ACAGTCAAATAGAAGCATATACATTAAAATACAATCGTAAACCTGCAACTATAGAAGAACTTGTTCAAGAAGGTTATATT
AAGGAGAATCAAAAGAATTGTAAAAGTGGTGAAAGCATCACAATCCGTGGTGGCGAGGCTATTGCATCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

67.961

100

0.68
  comGC Staphylococcus aureus N315

67.961

100

0.68
  comYC Streptococcus suis isolate S10

52.632

73.786

0.388
  comGC Bacillus subtilis subsp. subtilis str. 168

43.011

90.291

0.388
  comYC Streptococcus gordonii str. Challis substr. CH1

49.367

76.699

0.379
  comGC/cglC Streptococcus mitis SK321

50

73.786

0.369
  comGC/cglC Streptococcus mitis NCTC 12261

50

73.786

0.369