Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   MUA94_RS06130 Genome accession   NZ_CP094768
Coordinates   1218586..1219083 (+) Length   165 a.a.
NCBI ID   WP_258411170.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6202     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1213586..1224083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA94_RS06090 (MUA94_06080) - 1213630..1214616 (+) 987 WP_000161315.1 ROK family glucokinase -
  MUA94_RS06095 (MUA94_06085) - 1214616..1214945 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  MUA94_RS06100 (MUA94_06090) - 1214942..1215565 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  MUA94_RS06105 (MUA94_06095) comGA 1215617..1216591 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  MUA94_RS06110 (MUA94_06100) comGB 1216563..1217633 (+) 1071 WP_262538679.1 competence type IV pilus assembly protein ComGB Machinery gene
  MUA94_RS06115 (MUA94_06105) comGC 1217647..1217958 (+) 312 WP_262538680.1 competence type IV pilus major pilin ComGC Machinery gene
  MUA94_RS06120 (MUA94_06110) comGD 1217936..1218382 (+) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  MUA94_RS06125 (MUA94_06115) comGE 1218369..1218668 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  MUA94_RS06130 (MUA94_06120) comGF 1218586..1219083 (+) 498 WP_258411170.1 competence type IV pilus minor pilin ComGF Machinery gene
  MUA94_RS06135 (MUA94_06125) - 1219180..1219326 (+) 147 WP_001789879.1 hypothetical protein -
  MUA94_RS06140 (MUA94_06130) - 1219316..1219840 (+) 525 WP_001015120.1 shikimate kinase -
  MUA94_RS06145 (MUA94_06135) gcvT 1219999..1221090 (+) 1092 WP_262538681.1 glycine cleavage system aminomethyltransferase GcvT -
  MUA94_RS06150 (MUA94_06140) gcvPA 1221110..1222456 (+) 1347 WP_262538682.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  MUA94_RS06155 (MUA94_06145) gcvPB 1222449..1223921 (+) 1473 WP_262538683.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19167.92 Da        Isoelectric Point: 10.2192

>NTDB_id=672172 MUA94_RS06130 WP_258411170.1 1218586..1219083(+) (comGF) [Staphylococcus aureus strain IVB6202]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLVEMLIAMMVISIILLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDRNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYA

Nucleotide


Download         Length: 498 bp        

>NTDB_id=672172 MUA94_RS06130 WP_258411170.1 1218586..1219083(+) (comGF) [Staphylococcus aureus strain IVB6202]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTTGTTGAAATGTTAATAGCGATGATGGTTATAAGTATAATTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTTATTGAAAGTAGGGAATTAACAACTGTAGATTTTGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGTGTAGATAGAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)

Putative Competence protein ComGF (ComGF)

(69-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

97.561

99.394

0.97
  comGF Staphylococcus aureus MW2

96.341

99.394

0.958