Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   MUA94_RS06120 Genome accession   NZ_CP094768
Coordinates   1217936..1218382 (+) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6202     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1212936..1223382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA94_RS06085 (MUA94_06075) - 1213430..1213633 (+) 204 WP_000087561.1 YqgQ family protein -
  MUA94_RS06090 (MUA94_06080) - 1213630..1214616 (+) 987 WP_000161315.1 ROK family glucokinase -
  MUA94_RS06095 (MUA94_06085) - 1214616..1214945 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  MUA94_RS06100 (MUA94_06090) - 1214942..1215565 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  MUA94_RS06105 (MUA94_06095) comGA 1215617..1216591 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  MUA94_RS06110 (MUA94_06100) comGB 1216563..1217633 (+) 1071 WP_262538679.1 competence type IV pilus assembly protein ComGB Machinery gene
  MUA94_RS06115 (MUA94_06105) comGC 1217647..1217958 (+) 312 WP_262538680.1 competence type IV pilus major pilin ComGC Machinery gene
  MUA94_RS06120 (MUA94_06110) comGD 1217936..1218382 (+) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  MUA94_RS06125 (MUA94_06115) comGE 1218369..1218668 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  MUA94_RS06130 (MUA94_06120) comGF 1218586..1219083 (+) 498 WP_258411170.1 competence type IV pilus minor pilin ComGF Machinery gene
  MUA94_RS06135 (MUA94_06125) - 1219180..1219326 (+) 147 WP_001789879.1 hypothetical protein -
  MUA94_RS06140 (MUA94_06130) - 1219316..1219840 (+) 525 WP_001015120.1 shikimate kinase -
  MUA94_RS06145 (MUA94_06135) gcvT 1219999..1221090 (+) 1092 WP_262538681.1 glycine cleavage system aminomethyltransferase GcvT -
  MUA94_RS06150 (MUA94_06140) gcvPA 1221110..1222456 (+) 1347 WP_262538682.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=672170 MUA94_RS06120 WP_001796473.1 1217936..1218382(+) (comGD) [Staphylococcus aureus strain IVB6202]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=672170 MUA94_RS06120 WP_001796473.1 1217936..1218382(+) (comGD) [Staphylococcus aureus strain IVB6202]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993