Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   MUA19_RS04360 Genome accession   NZ_CP094741
Coordinates   935041..935670 (+) Length   209 a.a.
NCBI ID   WP_262617360.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain IVB6200     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 930041..940670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA19_RS04335 (MUA19_04320) - 930711..931721 (-) 1011 WP_262617357.1 aromatic acid exporter family protein -
  MUA19_RS04340 (MUA19_04325) map 932054..932812 (+) 759 WP_105986696.1 type I methionyl aminopeptidase -
  MUA19_RS04345 (MUA19_04330) - 932908..933297 (+) 390 WP_262617359.1 hypothetical protein -
  MUA19_RS04350 (MUA19_04335) liaF 933310..934011 (+) 702 WP_105986698.1 cell wall-active antibiotics response protein LiaF -
  MUA19_RS04355 (MUA19_04340) vraS 934008..935051 (+) 1044 WP_037575781.1 sensor histidine kinase Regulator
  MUA19_RS04360 (MUA19_04345) vraR 935041..935670 (+) 630 WP_262617360.1 response regulator transcription factor Regulator
  MUA19_RS04365 (MUA19_04350) - 935889..936461 (-) 573 WP_262617362.1 carbonic anhydrase -
  MUA19_RS04370 (MUA19_04355) - 936504..937772 (-) 1269 WP_105986700.1 YihY/virulence factor BrkB family protein -
  MUA19_RS04375 (MUA19_04360) - 937898..938173 (-) 276 WP_262617363.1 YtxH domain-containing protein -
  MUA19_RS04380 (MUA19_04365) - 938178..938636 (-) 459 WP_145400676.1 low molecular weight protein-tyrosine-phosphatase -
  MUA19_RS04385 (MUA19_04370) - 938769..938978 (+) 210 WP_037575795.1 DUF1128 domain-containing protein -
  MUA19_RS04390 (MUA19_04375) - 939009..940238 (+) 1230 WP_262617364.1 aminopeptidase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23531.25 Da        Isoelectric Point: 5.3980

>NTDB_id=671721 MUA19_RS04360 WP_262617360.1 935041..935670(+) (vraR) [Staphylococcus chromogenes strain IVB6200]
MTIKVLFVDDHEMVRIGISSYLSTQPDIEVVGEGASGKEAIEKAHALKPDLILMDLVMTDMDGVEATTQIKKDLPKIKVV
MLTSYIEDKEVYRALDAGVDSYILKTTSASDIAEAIRKTSKGESVFEAEVLVKMRNRMRQRAELYELLTEREMEILLLIS
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHRLIE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=671721 MUA19_RS04360 WP_262617360.1 935041..935670(+) (vraR) [Staphylococcus chromogenes strain IVB6200]
ATGACAATTAAAGTTTTATTTGTAGATGACCACGAAATGGTTAGAATTGGTATCTCAAGTTATTTATCTACGCAGCCAGA
TATTGAAGTTGTTGGGGAAGGCGCTTCGGGTAAAGAAGCCATCGAAAAAGCACATGCATTAAAACCTGATTTAATTTTAA
TGGATTTAGTGATGACAGATATGGACGGTGTAGAAGCGACAACTCAAATTAAAAAAGATTTACCCAAAATCAAAGTCGTG
ATGCTTACAAGTTATATTGAGGATAAAGAAGTTTACCGTGCATTAGATGCTGGTGTAGACAGTTATATTTTAAAAACAAC
AAGCGCCAGCGACATTGCCGAAGCTATTCGCAAAACATCTAAAGGGGAATCTGTCTTTGAAGCAGAAGTACTCGTTAAAA
TGAGAAATCGTATGAGACAACGTGCCGAACTTTACGAGCTTTTAACAGAAAGAGAAATGGAAATTTTATTATTGATTTCA
AAAGGCTATTCTAATCAAGAAATTGCGAGCGCTTCACATATCACGATTAAAACCGTTAAAACGCATGTTAGTAACATTTT
AAGTAAACTTGAAGTTCAAGACCGTACACAAGCTGTGATATATGCTTTCCAACACAGACTCATAGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

90.909

100

0.909
  degU Bacillus subtilis subsp. subtilis str. 168

35.268

100

0.378
  letA Legionella pneumophila str. Paris

36.364

100

0.364
  letA Legionella pneumophila strain ERS1305867

36.364

100

0.364