Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   MUA44_RS06620 Genome accession   NZ_CP094740
Coordinates   1383380..1383703 (+) Length   107 a.a.
NCBI ID   WP_224398811.1    Uniprot ID   -
Organism   Staphylococcus delphini strain IVB6190     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1378380..1388703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA44_RS06590 (MUA44_06580) - 1379060..1379263 (+) 204 WP_014613816.1 YqgQ family protein -
  MUA44_RS06595 (MUA44_06585) - 1379260..1380246 (+) 987 WP_019165227.1 ROK family glucokinase -
  MUA44_RS06600 (MUA44_06590) - 1380247..1380558 (+) 312 WP_019165228.1 MTH1187 family thiamine-binding protein -
  MUA44_RS06605 (MUA44_06595) - 1380571..1381200 (+) 630 WP_262612301.1 MBL fold metallo-hydrolase -
  MUA44_RS06610 (MUA44_06600) comGA 1381357..1382331 (+) 975 WP_019165230.1 competence type IV pilus ATPase ComGA Machinery gene
  MUA44_RS06615 (MUA44_06605) comGB 1382300..1383367 (+) 1068 WP_262612303.1 competence type IV pilus assembly protein ComGB -
  MUA44_RS06620 (MUA44_06610) comGC 1383380..1383703 (+) 324 WP_224398811.1 competence type IV pilus major pilin ComGC Machinery gene
  MUA44_RS06625 (MUA44_06615) comGD 1383660..1384121 (+) 462 WP_262612305.1 competence type IV pilus minor pilin ComGD -
  MUA44_RS06630 (MUA44_06620) - 1384226..1384426 (+) 201 WP_224398812.1 hypothetical protein -
  MUA44_RS06635 (MUA44_06625) - 1384332..1384817 (+) 486 WP_262612306.1 competence type IV pilus minor pilin ComGF -
  MUA44_RS06640 (MUA44_06630) - 1384981..1385508 (+) 528 WP_262612307.1 shikimate kinase -
  MUA44_RS06645 (MUA44_06635) gcvT 1385666..1386757 (+) 1092 WP_262612308.1 glycine cleavage system aminomethyltransferase GcvT -
  MUA44_RS06650 (MUA44_06640) gcvPA 1386770..1388119 (+) 1350 WP_262612309.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11987.15 Da        Isoelectric Point: 9.0966

>NTDB_id=671698 MUA44_RS06620 WP_224398811.1 1383380..1383703(+) (comGC) [Staphylococcus delphini strain IVB6190]
MIQQLKSKFNKKKGFTLIEMLLVLLIISVLLILIIPNIAKQSDHIQKTGCAAQLKMVDSQIEAYALKFNHKPNTIDDLVR
EGYIKESQKTCKSGEDITIRDGEAVAS

Nucleotide


Download         Length: 324 bp        

>NTDB_id=671698 MUA44_RS06620 WP_224398811.1 1383380..1383703(+) (comGC) [Staphylococcus delphini strain IVB6190]
ATGATTCAACAACTGAAATCAAAATTCAACAAAAAGAAAGGTTTTACATTAATTGAAATGCTACTTGTCCTGTTAATTAT
TAGTGTGCTATTGATACTCATTATCCCGAATATTGCTAAACAGTCAGATCATATCCAAAAAACGGGCTGTGCAGCACAAT
TAAAAATGGTCGATAGTCAAATAGAAGCCTATGCTTTAAAGTTTAACCACAAACCGAATACGATTGATGATTTAGTGCGT
GAAGGCTACATTAAAGAAAGTCAAAAAACATGTAAATCAGGTGAAGATATCACAATTAGAGATGGCGAAGCAGTTGCGTC
ATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

74.227

90.654

0.673
  comGC Staphylococcus aureus MW2

74.227

90.654

0.673
  comYC Streptococcus suis isolate S10

53.846

72.897

0.393
  comGC Bacillus subtilis subsp. subtilis str. 168

44.565

85.981

0.383
  comGC/cglC Streptococcus pneumoniae TIGR4

42.553

87.85

0.374
  comGC/cglC Streptococcus mitis SK321

43.478

85.981

0.374
  comGC Lactococcus lactis subsp. cremoris KW2

48.78

76.636

0.374