Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   MUA26_RS05685 Genome accession   NZ_CP094717
Coordinates   1164684..1164983 (+) Length   99 a.a.
NCBI ID   WP_262613691.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6246     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1159684..1169983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA26_RS05655 (MUA26_05635) - 1160437..1160640 (+) 204 WP_262613686.1 YqgQ family protein -
  MUA26_RS05660 (MUA26_05640) - 1160637..1161617 (+) 981 WP_262613687.1 ROK family glucokinase -
  MUA26_RS05665 (MUA26_05645) - 1161624..1161935 (+) 312 WP_262603242.1 MTH1187 family thiamine-binding protein -
  MUA26_RS05670 (MUA26_05650) - 1161964..1162587 (+) 624 WP_262613688.1 MBL fold metallo-hydrolase -
  MUA26_RS05675 (MUA26_05655) comGA 1162643..1163617 (+) 975 WP_262613689.1 competence type IV pilus ATPase ComGA Machinery gene
  MUA26_RS05680 (MUA26_05660) comGB 1163586..1164653 (+) 1068 WP_262613690.1 competence type IV pilus assembly protein ComGB -
  MUA26_RS05685 (MUA26_05665) comGC 1164684..1164983 (+) 300 WP_262613691.1 competence type IV pilus major pilin ComGC Machinery gene
  MUA26_RS05690 (MUA26_05670) comGD 1164961..1165407 (+) 447 WP_262613692.1 competence type IV pilus minor pilin ComGD -
  MUA26_RS05695 (MUA26_05675) - 1165400..1165693 (+) 294 WP_262605200.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  MUA26_RS05700 (MUA26_05680) - 1165686..1166084 (+) 399 WP_262603248.1 competence type IV pilus minor pilin ComGF -
  MUA26_RS05705 (MUA26_05685) - 1166250..1166774 (+) 525 WP_262603249.1 shikimate kinase -
  MUA26_RS05710 (MUA26_05690) gcvT 1166935..1168026 (+) 1092 WP_262603250.1 glycine cleavage system aminomethyltransferase GcvT -
  MUA26_RS05715 (MUA26_05695) gcvPA 1168039..1169388 (+) 1350 WP_262605203.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11179.17 Da        Isoelectric Point: 9.1433

>NTDB_id=671105 MUA26_RS05685 WP_262613691.1 1164684..1164983(+) (comGC) [Staphylococcus sp. IVB6246]
MRQTKGFTLIEMLLVLLIISVFLILIIPNIAKQSDHIQKTGCKAQMRLVDSQIEAYTLKFNQKPNSIDDLIREGYLKDVQ
KTCKSGETIRIQNGEAVAS

Nucleotide


Download         Length: 300 bp        

>NTDB_id=671105 MUA26_RS05685 WP_262613691.1 1164684..1164983(+) (comGC) [Staphylococcus sp. IVB6246]
TTGCGACAAACGAAAGGATTCACACTCATTGAGATGCTACTCGTTTTACTGATTATAAGTGTATTTCTCATTTTAATTAT
CCCAAATATCGCAAAACAATCTGATCATATTCAAAAAACAGGATGCAAAGCACAAATGCGCCTTGTCGACAGTCAAATAG
AAGCCTATACTTTAAAATTTAATCAAAAACCAAATTCGATAGATGATTTAATTCGGGAAGGGTATTTAAAAGATGTTCAA
AAGACTTGTAAATCTGGGGAAACAATTCGTATTCAAAATGGCGAGGCCGTTGCATCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

69.697

100

0.697
  comGC Staphylococcus aureus MW2

69.697

100

0.697
  comGC Bacillus subtilis subsp. subtilis str. 168

43.956

91.919

0.404
  comGC/cglC Streptococcus mitis SK321

39.362

94.949

0.374
  comGC/cglC Streptococcus pneumoniae R6

38.298

94.949

0.364
  comGC/cglC Streptococcus pneumoniae TIGR4

38.298

94.949

0.364
  comGC/cglC Streptococcus pneumoniae D39

38.298

94.949

0.364
  comGC/cglC Streptococcus pneumoniae Rx1

38.298

94.949

0.364