Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUA28_RS12845 Genome accession   NZ_CP094707
Coordinates   2668179..2668697 (-) Length   172 a.a.
NCBI ID   WP_002480323.1    Uniprot ID   -
Organism   Staphylococcus simulans strain IVB6192     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2663179..2673697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA28_RS12820 (MUA28_12790) - 2664222..2664809 (-) 588 WP_070625402.1 histidine phosphatase family protein -
  MUA28_RS12825 (MUA28_12795) - 2665146..2665757 (-) 612 WP_107552664.1 hypothetical protein -
  MUA28_RS12830 (MUA28_12800) - 2666210..2666950 (-) 741 WP_057510318.1 hypothetical protein -
  MUA28_RS12835 (MUA28_12805) - 2667222..2667740 (+) 519 WP_057510317.1 hypothetical protein -
  MUA28_RS12840 (MUA28_12810) rpsR 2667883..2668125 (-) 243 WP_002480324.1 30S ribosomal protein S18 -
  MUA28_RS12845 (MUA28_12815) ssbA 2668179..2668697 (-) 519 WP_002480323.1 single-stranded DNA-binding protein Machinery gene
  MUA28_RS12850 (MUA28_12820) rpsF 2668719..2669015 (-) 297 WP_002480322.1 30S ribosomal protein S6 -
  MUA28_RS12855 (MUA28_12825) - 2669177..2670160 (-) 984 WP_262571087.1 thermonuclease family protein -
  MUA28_RS12860 (MUA28_12830) - 2670314..2670571 (+) 258 WP_002480320.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
  MUA28_RS12865 (MUA28_12835) - 2670565..2670903 (+) 339 WP_002480319.1 type II toxin-antitoxin system PemK/MazF family toxin -
  MUA28_RS12870 (MUA28_12840) argF 2671178..2672182 (+) 1005 WP_262557379.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19044.65 Da        Isoelectric Point: 5.1953

>NTDB_id=670893 MUA28_RS12845 WP_002480323.1 2668179..2668697(-) (ssbA) [Staphylococcus simulans strain IVB6192]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVSNYLFKGSLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKSQNQRHGQQSGGNNQFQSYGQNYGGQQQGQNTSSYQNNNSSNAGQSDNPFANTN
GPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=670893 MUA28_RS12845 WP_002480323.1 2668179..2668697(-) (ssbA) [Staphylococcus simulans strain IVB6192]
ATGATTAACAGAGTTGTATTAGTAGGCCGTTTAACTAAGGATCCTGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACTTTTACTCTAGCGGTTAATCGTACGTTTACGAATGCGCAAGGGGAACGTGAAGCGGACTTTATTAACTGTGTTGTTT
TTAGAAAACAAGCAGAAAACGTAAGCAATTACTTGTTTAAAGGAAGTCTTGCAGGCGTTGATGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGACGCCGTATCTTTGTTACTGAAGTTGTATGTGACAGTGTTCAATTCCTTGAACCAAAATC
ACAAAACCAACGTCATGGCCAACAATCTGGCGGTAATAACCAATTCCAGAGCTATGGTCAAAACTATGGTGGTCAACAAC
AAGGACAAAATACGTCATCTTATCAAAACAACAATTCATCCAACGCTGGTCAATCAGACAATCCATTCGCAAATACGAAC
GGACCTATTGACATCAGTGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.221

100

0.634
  ssb Latilactobacillus sakei subsp. sakei 23K

56.897

100

0.576
  ssb Glaesserella parasuis strain SC1401

35.326

100

0.378
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

63.953

0.372
  ssb Vibrio cholerae strain A1552

34.831

100

0.36