Detailed information NTG0670885

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: OHB04_RS39560
• Genome accession: NZ_CP109104
• Coordinates: 8919843..8920478 (-)
• Length: 211 a.a.
• NCBI ID: WP_326809603.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_01775
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 8914843..8925478

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHB04_RS39530 (OHB04_39565)	-	8915856..8916119 (-)	264	WP_326692432.1	DUF397 domain-containing protein	-
OHB04_RS39535 (OHB04_39570)	-	8916133..8917068 (-)	936	WP_326692433.1	helix-turn-helix transcriptional regulator	-
OHB04_RS39540 (OHB04_39575)	-	8917391..8917822 (+)	432	WP_326692434.1	ATP-binding protein	-
OHB04_RS39545 (OHB04_39580)	-	8917856..8918329 (-)	474	WP_326692435.1	DUF6328 family protein	-
OHB04_RS39550 (OHB04_39585)	-	8918503..8918994 (-)	492	WP_326692436.1	hypothetical protein	-
OHB04_RS39555 (OHB04_39590)	-	8919506..8919826 (-)	321	WP_326809327.1	hypothetical protein	-
OHB04_RS39560 (OHB04_39595)	clpP	8919843..8920478 (-)	636	WP_326809603.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHB04_RS39565 (OHB04_39600)	-	8920588..8920896 (+)	309	WP_326692439.1	type II toxin-antitoxin system Phd/YefM family antitoxin	-
OHB04_RS39570 (OHB04_39605)	-	8920994..8921950 (-)	957	WP_326692440.1	M28 family metallopeptidase	-
OHB04_RS39575 (OHB04_39610)	-	8922125..8923129 (-)	1005	WP_326692441.1	ABC transporter permease	-
OHB04_RS39580 (OHB04_39615)	-	8923238..8923921 (+)	684	WP_326809328.1	TetR/AcrR family transcriptional regulator	-
OHB04_RS39585 (OHB04_39620)	-	8924036..8924338 (+)	303	WP_326692443.1	urease subunit gamma	-
OHB04_RS39590 (OHB04_39625)	-	8924352..8924663 (+)	312	WP_326692444.1	urease subunit beta	-

Sequence

Protein

• Length: 211 a.a.
• Molecular weight: 23462.53 Da
• Isoelectric Point: 5.1134

>NTDB_id=670885 OHB04_RS39560 WP_326809603.1 8919843..8920478(-) (clpP) [Streptomyces sp. NBC_01775]
MRNQPTARYVLPEFTERTSSGLRTMDPYSKLMEERIVFLGTQIDDTSANDVMAQFIHLEHSAPDQDISLYINSPGGSFTA
MTAIYDTMRFVSCDIETVCLGQAASAASVLLAAGTPGKRLALPGARILIHQPSLNEPVQGQADDLEIQAREMLRTREMLE
ELYERHTGQPRNKVSADIERDKIFDAEQAIAYGLIDRITTSRKRTASPTRG

Nucleotide

• Length: 636 bp

>NTDB_id=670885 OHB04_RS39560 WP_326809603.1 8919843..8920478(-) (clpP) [Streptomyces sp. NBC_01775]
ATGCGGAATCAGCCGACAGCCCGCTACGTCCTGCCCGAGTTCACGGAGCGCACGAGCAGCGGCCTGCGCACGATGGATCC
GTACTCGAAGCTCATGGAGGAGCGGATCGTCTTCCTGGGCACCCAGATCGACGACACCTCGGCCAACGACGTCATGGCGC
AGTTCATCCACCTCGAACACAGCGCGCCCGACCAGGACATCTCGCTCTACATCAACTCCCCCGGCGGCTCGTTCACGGCC
ATGACCGCGATCTACGACACGATGCGGTTCGTCTCCTGCGACATCGAGACGGTGTGCCTGGGCCAGGCGGCCTCGGCCGC
CTCCGTGCTGCTGGCAGCGGGCACCCCGGGCAAGCGGCTCGCGCTGCCGGGGGCGCGCATCCTCATCCACCAGCCCTCGC
TCAACGAGCCGGTGCAAGGTCAGGCGGACGACCTGGAGATCCAGGCCCGGGAGATGCTGCGCACCCGCGAGATGCTGGAG
GAGCTGTACGAGCGGCACACCGGTCAGCCCAGGAACAAGGTCAGCGCGGACATCGAGCGTGACAAGATCTTCGATGCCGA
ACAGGCCATCGCCTACGGGCTGATCGACCGGATCACCACCAGCCGCAAGCGCACCGCGTCCCCCACGCGCGGCTGA

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (22-201)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	46.597	90.521	0.422
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	45.213	89.1	0.403
clpP	Streptococcus thermophilus LMG 18311	40.722	91.943	0.374
clpP	Streptococcus thermophilus LMD-9	40.722	91.943	0.374
clpP	Streptococcus pneumoniae Rx1	41.27	89.573	0.37
clpP	Streptococcus pneumoniae D39	41.27	89.573	0.37
clpP	Streptococcus pneumoniae R6	41.27	89.573	0.37
clpP	Streptococcus pneumoniae TIGR4	41.27	89.573	0.37
clpP	Streptococcus pyogenes JRS4	40.741	89.573	0.365
clpP	Streptococcus pyogenes MGAS315	40.741	89.573	0.365
clpP	Streptococcus mutans UA159	40.212	89.573	0.36