Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUA31_RS09195 Genome accession   NZ_CP094698
Coordinates   1922712..1923158 (-) Length   148 a.a.
NCBI ID   WP_262546318.1    Uniprot ID   -
Organism   Staphylococcus simulans strain IVB6241     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1917712..1928158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA31_RS09155 (MUA31_09155) - 1918138..1918662 (-) 525 WP_262546300.1 SA1788 family PVL leukocidin-associated protein -
  MUA31_RS09160 (MUA31_09160) - 1918665..1918850 (-) 186 WP_262546302.1 hypothetical protein -
  MUA31_RS09165 (MUA31_09165) - 1918851..1919258 (-) 408 WP_262546305.1 RusA family crossover junction endodeoxyribonuclease -
  MUA31_RS09170 (MUA31_09170) - 1919424..1920197 (-) 774 WP_262546308.1 ATP-binding protein -
  MUA31_RS09175 (MUA31_09175) - 1920210..1920932 (-) 723 WP_262546311.1 conserved phage C-terminal domain-containing protein -
  MUA31_RS09180 (MUA31_09180) - 1920978..1921460 (+) 483 WP_106421050.1 hypothetical protein -
  MUA31_RS09185 (MUA31_09185) - 1921476..1922147 (-) 672 WP_262546313.1 putative HNHc nuclease -
  MUA31_RS09190 (MUA31_09190) - 1922148..1922699 (-) 552 WP_262546315.1 NUMOD4 motif-containing HNH endonuclease -
  MUA31_RS09195 (MUA31_09195) ssbA 1922712..1923158 (-) 447 WP_262546318.1 single-stranded DNA-binding protein Machinery gene
  MUA31_RS09200 (MUA31_09200) - 1923158..1923829 (-) 672 WP_262546321.1 ERF family protein -
  MUA31_RS09205 (MUA31_09205) - 1923829..1924311 (-) 483 WP_262546323.1 siphovirus Gp157 family protein -
  MUA31_RS09210 (MUA31_09210) - 1924311..1924538 (-) 228 WP_070867200.1 hypothetical protein -
  MUA31_RS09215 (MUA31_09215) - 1924628..1924831 (-) 204 WP_262546327.1 helix-turn-helix transcriptional regulator -
  MUA31_RS09220 (MUA31_09220) - 1924843..1925058 (-) 216 WP_262546331.1 hypothetical protein -
  MUA31_RS09225 (MUA31_09225) - 1925064..1925276 (-) 213 WP_262546334.1 hypothetical protein -
  MUA31_RS09230 (MUA31_09230) - 1925290..1925661 (-) 372 WP_262546337.1 hypothetical protein -
  MUA31_RS09235 (MUA31_09235) - 1925675..1925941 (-) 267 WP_262546340.1 hypothetical protein -
  MUA31_RS09240 (MUA31_09240) - 1926000..1926674 (+) 675 WP_107529553.1 hypothetical protein -
  MUA31_RS09245 (MUA31_09245) - 1926677..1926874 (-) 198 WP_262546343.1 hypothetical protein -
  MUA31_RS09250 (MUA31_09250) - 1926888..1927136 (-) 249 WP_070848526.1 helix-turn-helix transcriptional regulator -
  MUA31_RS09255 (MUA31_09255) - 1927331..1927969 (+) 639 WP_262546346.1 S24 family peptidase -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16673.37 Da        Isoelectric Point: 5.2477

>NTDB_id=670768 MUA31_RS09195 WP_262546318.1 1922712..1923158(-) (ssbA) [Staphylococcus simulans strain IVB6241]
MLNRVVLVGRLTKDPEFRTTQSGVDVATFTLAVNRNFKSKNGEQQADFINCVVFRKQAENVNNYLNKGSLAGIDGRLQSR
SYENKEGQRVFVTEVVCDSVQFLEPKNAQASNSNQSNNEVQQREKALQSDNPFNNSNNFDMDDSSLPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=670768 MUA31_RS09195 WP_262546318.1 1922712..1923158(-) (ssbA) [Staphylococcus simulans strain IVB6241]
ATGTTAAACAGAGTCGTATTAGTAGGTCGCTTAACAAAAGACCCAGAATTCAGAACAACGCAAAGCGGTGTAGATGTAGC
AACATTCACACTAGCGGTCAACCGTAATTTTAAGAGTAAAAACGGAGAGCAACAGGCGGACTTTATCAACTGTGTTGTAT
TCCGTAAACAAGCAGAAAACGTCAATAATTATTTGAATAAAGGCAGTTTAGCAGGTATCGATGGTCGCTTACAATCACGA
AGCTATGAGAATAAGGAAGGGCAAAGAGTGTTTGTTACGGAAGTCGTATGTGACAGTGTGCAATTCCTAGAACCTAAGAA
TGCACAAGCCTCAAACAGTAACCAATCAAATAACGAAGTGCAGCAAAGAGAGAAGGCGCTTCAAAGCGACAATCCATTCA
ATAATAGCAACAACTTTGATATGGATGATTCATCTTTACCGTTTTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.977

100

0.662
  ssb Latilactobacillus sakei subsp. sakei 23K

50

100

0.574
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

71.622

0.419
  ssbB Streptococcus sobrinus strain NIDR 6715-7

39.189

100

0.392
  ssbA Streptococcus mutans UA159

46.667

81.081

0.378