Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUA31_RS07935 Genome accession   NZ_CP094698
Coordinates   1677837..1678283 (-) Length   148 a.a.
NCBI ID   WP_262546158.1    Uniprot ID   -
Organism   Staphylococcus simulans strain IVB6241     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1672837..1683283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA31_RS07890 (MUA31_07890) - 1672899..1673096 (-) 198 WP_262546139.1 hypothetical protein -
  MUA31_RS07895 (MUA31_07895) - 1673097..1673534 (-) 438 WP_262546141.1 DUF3310 domain-containing protein -
  MUA31_RS07900 (MUA31_07900) - 1673535..1674059 (-) 525 WP_262546143.1 SA1788 family PVL leukocidin-associated protein -
  MUA31_RS07905 (MUA31_07905) - 1674072..1674263 (-) 192 WP_262546145.1 hypothetical protein -
  MUA31_RS07910 (MUA31_07910) - 1674264..1674671 (-) 408 WP_262546148.1 RusA family crossover junction endodeoxyribonuclease -
  MUA31_RS07915 (MUA31_07915) - 1674837..1675610 (-) 774 WP_262546150.1 ATP-binding protein -
  MUA31_RS07920 (MUA31_07920) - 1675621..1676340 (-) 720 WP_262546152.1 helix-turn-helix domain-containing protein -
  MUA31_RS07925 (MUA31_07925) - 1676384..1677040 (+) 657 WP_262546154.1 hypothetical protein -
  MUA31_RS07930 (MUA31_07930) - 1677150..1677824 (-) 675 WP_262546156.1 putative HNHc nuclease -
  MUA31_RS07935 (MUA31_07935) ssbA 1677837..1678283 (-) 447 WP_262546158.1 single-stranded DNA-binding protein Machinery gene
  MUA31_RS07940 (MUA31_07940) - 1678283..1678954 (-) 672 WP_262546162.1 ERF family protein -
  MUA31_RS07945 (MUA31_07945) - 1678954..1679439 (-) 486 WP_262547451.1 siphovirus Gp157 family protein -
  MUA31_RS07950 (MUA31_07950) - 1679436..1679663 (-) 228 WP_262546165.1 hypothetical protein -
  MUA31_RS07955 (MUA31_07955) - 1679761..1679976 (-) 216 WP_107567898.1 hypothetical protein -
  MUA31_RS07960 (MUA31_07960) - 1679989..1680291 (-) 303 WP_002480770.1 DUF771 domain-containing protein -
  MUA31_RS07965 (MUA31_07965) - 1680390..1681007 (+) 618 WP_262546167.1 hypothetical protein -
  MUA31_RS07970 (MUA31_07970) - 1681010..1681207 (-) 198 WP_262546169.1 hypothetical protein -
  MUA31_RS07975 (MUA31_07975) - 1681253..1681591 (+) 339 WP_058714326.1 hypothetical protein -
  MUA31_RS07980 (MUA31_07980) - 1681577..1681810 (-) 234 WP_030058915.1 MW1434 family type I TA system toxin -
  MUA31_RS07985 (MUA31_07985) - 1681844..1682626 (-) 783 WP_262546171.1 Bro-N domain-containing protein -
  MUA31_RS07990 (MUA31_07990) - 1682738..1683100 (+) 363 WP_262546173.1 hypothetical protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16784.43 Da        Isoelectric Point: 4.7621

>NTDB_id=670764 MUA31_RS07935 WP_262546158.1 1677837..1678283(-) (ssbA) [Staphylococcus simulans strain IVB6241]
MLNRVVLVGRLTKDPEFRTTQSGVDVATFTLAVNRNFKSKNGEQQADFINCVVFRKQAENINNYLNKGNLAGVDGRLQSR
SYENDEGRRVFVTEVVCDSVQFLEPKNAQASNNNQSNNEVQQREKALQSDNPFNNSNNFDMDTDDLPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=670764 MUA31_RS07935 WP_262546158.1 1677837..1678283(-) (ssbA) [Staphylococcus simulans strain IVB6241]
ATGTTAAACAGAGTCGTATTAGTAGGTCGCTTAACAAAAGACCCAGAATTCAGAACAACGCAAAGCGGTGTAGATGTAGC
AACATTCACACTAGCAGTCAACCGTAATTTTAAGAGTAAAAATGGAGAACAACAGGCAGACTTTATCAACTGTGTTGTAT
TCCGTAAACAAGCAGAAAACATCAATAATTATTTGAATAAAGGAAATTTAGCTGGTGTCGATGGTCGCTTACAATCACGC
AGCTATGAAAACGACGAAGGCCGCCGTGTATTTGTTACGGAAGTCGTGTGTGACAGTGTGCAATTCTTAGAACCTAAGAA
TGCACAAGCCTCAAACAATAACCAATCAAATAACGAAGTGCAGCAAAGGGAGAAGGCGCTTCAAAGCGACAATCCATTCA
ATAATAGCAACAACTTTGATATGGATACGGATGATTTACCTTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.814

100

0.649
  ssb Latilactobacillus sakei subsp. sakei 23K

49.412

100

0.568
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

71.622

0.419
  ssbA Streptococcus mutans UA159

46.667

81.081

0.378
  ssbB Streptococcus sobrinus strain NIDR 6715-7

37.838

100

0.378