Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ISX51_RS08680 Genome accession   NZ_CP094659
Coordinates   1907558..1908118 (+) Length   186 a.a.
NCBI ID   WP_099167463.1    Uniprot ID   A0A4U2AAW7
Organism   Vibrio lentus strain ED252     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1902558..1913118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISX51_RS08670 (ISX51_08665) galU 1905602..1906474 (-) 873 WP_102306656.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ISX51_RS08675 (ISX51_08670) qstR 1906632..1907279 (-) 648 WP_281052575.1 LuxR C-terminal-related transcriptional regulator Regulator
  ISX51_RS08680 (ISX51_08675) ssb 1907558..1908118 (+) 561 WP_099167463.1 single-stranded DNA-binding protein Machinery gene
  ISX51_RS08685 (ISX51_08680) csrD 1908280..1910295 (+) 2016 WP_065113111.1 RNase E specificity factor CsrD -
  ISX51_RS08690 (ISX51_08685) - 1910298..1911740 (+) 1443 WP_102281890.1 MSHA biogenesis protein MshI -
  ISX51_RS08695 (ISX51_08690) pilO 1911740..1912387 (+) 648 WP_281052576.1 type 4a pilus biogenesis protein PilO -
  ISX51_RS08700 (ISX51_08695) - 1912380..1912709 (+) 330 WP_281052577.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20514.62 Da        Isoelectric Point: 5.2358

>NTDB_id=670491 ISX51_RS08680 WP_099167463.1 1907558..1908118(+) (ssb) [Vibrio lentus strain ED252]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNNNQQQGGWGQPQQPQQQQQQYSAPAQQQPK
APQQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=670491 ISX51_RS08680 WP_099167463.1 1907558..1908118(+) (ssb) [Vibrio lentus strain ED252]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGACAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTGGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAAACACGTAAATGGCAAGATCAAAGCGGTCAAGACCGTTACACTACAGAAGTGGTTGTTCAAGGCTT
CAACGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGTGCTCCTGCTCAAGGCGGTATGGGTAACAACAACCAAC
AGCAAGGTGGTTGGGGTCAGCCACAGCAGCCACAACAACAGCAGCAACAATACAGTGCTCCAGCTCAACAGCAGCCAAAA
GCACCTCAACAAGCTCCACAACAGGCTCAACCTCAATATAATGAGCCACCGATGGATTTTGATGATGACATCCCATTTTA
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U2AAW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.818

100

0.823
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.581
  ssb Neisseria meningitidis MC58

47.849

100

0.478
  ssb Neisseria gonorrhoeae MS11

47.849

100

0.478