Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   ISX51_RS08675 Genome accession   NZ_CP094659
Coordinates   1906632..1907279 (-) Length   215 a.a.
NCBI ID   WP_281052575.1    Uniprot ID   -
Organism   Vibrio lentus strain ED252     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1901632..1912279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISX51_RS08665 (ISX51_08660) uvrA 1902549..1905380 (-) 2832 WP_281052574.1 excinuclease ABC subunit UvrA -
  ISX51_RS08670 (ISX51_08665) galU 1905602..1906474 (-) 873 WP_102306656.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ISX51_RS08675 (ISX51_08670) qstR 1906632..1907279 (-) 648 WP_281052575.1 LuxR C-terminal-related transcriptional regulator Regulator
  ISX51_RS08680 (ISX51_08675) ssb 1907558..1908118 (+) 561 WP_099167463.1 single-stranded DNA-binding protein Machinery gene
  ISX51_RS08685 (ISX51_08680) csrD 1908280..1910295 (+) 2016 WP_065113111.1 RNase E specificity factor CsrD -
  ISX51_RS08690 (ISX51_08685) - 1910298..1911740 (+) 1443 WP_102281890.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24914.03 Da        Isoelectric Point: 9.8409

>NTDB_id=670490 ISX51_RS08675 WP_281052575.1 1906632..1907279(-) (qstR) [Vibrio lentus strain ED252]
MRKSRYARTLHFICIDPSNTYLHVKEIEKFLSLTLFKMTPDDLMLFDRKQSNRILLVDYKEVPQLTSLHPNLPVMWKNHE
IILFNVPKALPTSELITFGVLKGLFYNTEEKAKIAKGLEEVINGDNWLPRKVASQLLFYYRNIVSTNTTPTNVDLTIREL
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=670490 ISX51_RS08675 WP_281052575.1 1906632..1907279(-) (qstR) [Vibrio lentus strain ED252]
ATGAGAAAATCTCGATATGCTCGCACTTTGCATTTTATTTGCATCGATCCGAGTAACACCTATTTACATGTTAAAGAGAT
TGAAAAGTTTCTATCTCTAACCCTTTTCAAGATGACACCAGATGATCTGATGTTATTTGACCGAAAGCAGAGCAACCGAA
TTTTGCTCGTTGATTATAAAGAGGTACCTCAATTAACGAGCCTTCATCCAAATCTACCCGTGATGTGGAAAAATCATGAG
ATCATTCTATTCAACGTCCCCAAGGCACTGCCTACATCGGAGCTGATTACGTTTGGCGTATTAAAAGGTCTGTTTTACAA
CACTGAAGAGAAAGCCAAAATAGCGAAGGGGCTTGAAGAGGTGATCAATGGAGACAATTGGCTACCTAGAAAAGTGGCAA
GCCAGTTGCTGTTCTACTATCGAAACATCGTGAGCACCAATACAACCCCCACCAATGTCGACTTAACCATTAGAGAGTTG
CAAGTCATTCGTTGTCTTCAGTCAGGCTCATCAAACACGCAAATAGCCGATGACTTATTTATTAGTGAGTTCACCGTCAA
ATCTCACCTTTATCAGATATTTCGTAAGCTGGCCGTTAAAAATCGAGTCCAAGCTATTGCATGGGCAAACCAAAACTTGC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

54.884

100

0.549
  qstR Vibrio parahaemolyticus RIMD 2210633

53.953

100

0.54
  qstR Vibrio cholerae strain A1552

49.533

99.535

0.493