Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ISX51_RS01560 Genome accession   NZ_CP094659
Coordinates   327737..329260 (+) Length   507 a.a.
NCBI ID   WP_281053264.1    Uniprot ID   -
Organism   Vibrio lentus strain ED252     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 322737..334260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISX51_RS01545 (ISX51_01545) - 324352..325320 (-) 969 WP_017107538.1 branched-chain amino acid transaminase -
  ISX51_RS01550 (ISX51_01550) ilvM 325333..325617 (-) 285 WP_017111739.1 acetolactate synthase 2 small subunit -
  ISX51_RS01555 (ISX51_01555) ilvG 325619..327265 (-) 1647 WP_281053263.1 acetolactate synthase 2 catalytic subunit -
  ISX51_RS01560 (ISX51_01560) comM 327737..329260 (+) 1524 WP_281053264.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ISX51_RS01565 (ISX51_01565) - 329397..330350 (-) 954 WP_281053265.1 DUF2860 domain-containing protein -
  ISX51_RS01570 (ISX51_01570) - 330587..331186 (-) 600 WP_017109674.1 thiol:disulfide interchange protein DsbA/DsbL -
  ISX51_RS01575 (ISX51_01575) - 331242..332228 (-) 987 WP_065104220.1 serine/threonine protein kinase -
  ISX51_RS01580 (ISX51_01580) ccoG 332303..333721 (-) 1419 WP_017109665.1 cytochrome c oxidase accessory protein CcoG -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55645.85 Da        Isoelectric Point: 7.9173

>NTDB_id=670462 ISX51_RS01560 WP_281053264.1 327737..329260(+) (comM) [Vibrio lentus strain ED252]
MGLAIIHSRASVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPSKRITVNLAPADLPKEGGR
FDLPIALGILVASDQLPTSKIAQHEFIGELALSGELRSVKGVLPATLAADSVERCLVVPHHNGDQAALVGKGAHKSAQTL
LEVCADMCGQAQLGLYRTEQHQVDVIEHRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSD
HEAMETASVASLTQQEINQYNWKQRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRVAGKTRFPARFQLVGALNPSPTGYYEGNQARANPQIILRYLNRLSGPLLDRFDMSLEIPLLPKGMLAEGGDR
GETTQVVKQRVKQARQLMLSRNHKSNALLGSREIEKYCPLRREDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGNEQ
IEKKHLSEALGYRAMDRLLKQLSAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=670462 ISX51_RS01560 WP_281053264.1 327737..329260(+) (comM) [Vibrio lentus strain ED252]
ATGGGACTCGCGATAATTCATAGCCGAGCTAGTGTGGGTGTAGAGGCGCCAGAAGTGACCGTTGAGGTGCATATAAGCAA
CGGAATGCCCGGTTTTACGCTGGTGGGTTTACCTGAAACAACGGTCAAGGAATCTAAAGATCGAGTAAGGAGTGCCATCA
TTAATTCTCGCTTTGAATTCCCATCGAAAAGAATCACCGTCAACCTTGCTCCTGCCGATTTACCCAAAGAAGGAGGGCGT
TTTGACCTACCAATTGCTCTGGGTATTCTGGTGGCATCCGATCAACTACCCACATCAAAAATAGCCCAACATGAGTTTAT
TGGTGAGTTGGCGTTATCGGGAGAGTTACGCTCAGTCAAAGGAGTGCTACCAGCGACATTAGCGGCGGATAGTGTTGAGC
GATGCTTGGTGGTACCGCATCACAATGGCGATCAGGCAGCCTTAGTTGGCAAGGGGGCGCATAAGTCAGCGCAAACGTTG
TTAGAGGTTTGCGCGGATATGTGTGGTCAGGCTCAGCTTGGGTTATACCGGACAGAGCAACATCAGGTCGATGTTATCGA
ACATCGTGATTTGCAGGACATCATTGGTCAACAGCAAGGTAAACGAGCATTGGAGATCGCTGCTGCTGGCAACCACAACT
TACTTTTTCTTGGCCCACCGGGAACAGGCAAAACTATGTTGGCGTCTCGATTGCGTGACTTACTGCCTGAAATGAGTGAT
CACGAGGCGATGGAAACTGCTTCGGTGGCCTCGTTAACGCAGCAAGAGATCAATCAATACAACTGGAAGCAAAGGCCTTT
TCGATCTCCTCATCATTCCAGTTCGATGGCGGCATTGGTGGGTGGTGGTTCCGTACCTCGCCCCGGAGAGATCTCTTTGG
CGCATAACGGATTATTGTTTCTCGATGAGATGCCGGAGTTTGAACGTAAGGTGCTCGATTCACTGCGAGAGCCGTTGGAG
TCAGGTGAGATCATTATTTCACGTGTAGCAGGCAAGACACGTTTCCCAGCTCGCTTTCAATTGGTGGGTGCGTTGAACCC
TAGCCCAACAGGTTATTACGAAGGCAATCAAGCGCGAGCTAATCCTCAGATCATATTGCGCTATCTCAATCGATTGTCTG
GGCCATTACTGGATAGGTTCGACATGTCATTAGAGATCCCACTATTGCCTAAAGGGATGTTGGCTGAAGGTGGCGATCGT
GGTGAAACGACTCAAGTGGTAAAACAACGGGTCAAACAAGCGCGCCAGTTGATGCTGTCTAGGAACCATAAATCGAATGC
GCTGTTAGGTAGCCGAGAAATTGAAAAGTATTGCCCATTGCGACGCGAGGATGCGGAGTTTTTAGAAACGGCGCTGCATC
GATTGGGTTTATCGATTCGTGCCTATCATCGAATCATCAAGGTTGCGCGAACTATTGCGGACCTAGAGGGTAATGAGCAG
ATTGAAAAGAAGCATTTATCAGAGGCGCTTGGCTATCGAGCGATGGATCGACTGTTGAAACAACTCTCGGCTCAAGCTGT
ATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

83.432

100

0.834
  comM Vibrio campbellii strain DS40M4

83.432

100

0.834
  comM Haemophilus influenzae Rd KW20

65.157

100

0.653
  comM Glaesserella parasuis strain SC1401

62.891

100

0.635
  comM Legionella pneumophila str. Paris

48.589

97.83

0.475
  comM Legionella pneumophila strain ERS1305867

48.589

97.83

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.49

99.803

0.424