Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MMY79_RS18245 Genome accession   NZ_CP094657
Coordinates   3926540..3928027 (+) Length   495 a.a.
NCBI ID   WP_252610762.1    Uniprot ID   -
Organism   Acinetobacter sp. XS-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3921540..3933027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMY79_RS18220 (MMY79_18215) ribD 3922457..3923542 (-) 1086 WP_252610758.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  MMY79_RS18225 (MMY79_18220) nrdR 3923558..3924016 (-) 459 WP_003654416.1 transcriptional regulator NrdR -
  MMY79_RS18230 (MMY79_18225) - 3924179..3925573 (-) 1395 WP_252610760.1 ammonium transporter -
  MMY79_RS18235 (MMY79_18230) glnK 3925630..3925968 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  MMY79_RS18240 (MMY79_18235) - 3926247..3926474 (+) 228 WP_002121136.1 accessory factor UbiK family protein -
  MMY79_RS18245 (MMY79_18240) comM 3926540..3928027 (+) 1488 WP_252610762.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MMY79_RS18250 (MMY79_18245) - 3928024..3929475 (-) 1452 WP_252610764.1 PLP-dependent aminotransferase family protein -
  MMY79_RS18255 (MMY79_18250) - 3929587..3930363 (+) 777 WP_252610766.1 aldolase -
  MMY79_RS18260 (MMY79_18255) - 3930379..3931257 (+) 879 WP_252610768.1 dihydrodipicolinate synthase family protein -
  MMY79_RS18265 (MMY79_18260) - 3931301..3932113 (-) 813 WP_252610770.1 TorF family putative porin -
  MMY79_RS18270 (MMY79_18265) - 3932170..3932340 (-) 171 WP_252610771.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54356.26 Da        Isoelectric Point: 7.3843

>NTDB_id=670447 MMY79_RS18245 WP_252610762.1 3926540..3928027(+) (comM) [Acinetobacter sp. XS-4]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIAVGILIASGQLPENCAEDFELIGELALDGHVRPVSGTLTLAMACQQAKHKMLLPLDNSQDISHLPDLECYPVSHL
KEVCEHFLGTKSLTSVEPSTTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPTE
DSTAVRQRVISAYEQQMQRQNCLNQALSPKQLEQHAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ
SSHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=670447 MMY79_RS18245 WP_252610762.1 3926540..3928027(+) (comM) [Acinetobacter sp. XS-4]
ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTGGGTTTACATGCACCTCTGATTGAAGTTGAGGTACATGTGAGTCA
AGGCTTACCTTCTCTTACCATTGTCGGACTAGCAGAGGCGGCAGTAAGAGAAAGTAAAGACCGAGTTCGCTCAGCCATTA
TTAATAGTGGATTTCAATTTCCAACCAAACGGCTGACCATTAATCTTGCACCAGCAGATTTGCCCAAAGATGGGTCACGC
CTAGATTTACCAATTGCTGTAGGCATTTTAATTGCCTCTGGCCAGCTTCCAGAAAACTGTGCCGAAGATTTTGAATTAAT
TGGTGAATTAGCGCTGGATGGTCATGTAAGACCAGTGTCAGGTACTTTAACTTTGGCAATGGCTTGTCAACAGGCCAAGC
ATAAAATGCTTTTACCTCTCGATAATAGTCAGGATATTAGCCATTTACCGGATCTTGAATGTTATCCAGTGAGCCACTTA
AAAGAAGTCTGTGAACATTTTCTGGGCACAAAGTCTCTAACTTCGGTTGAACCTTCAACCACATCAAATCAAATGCCTTA
TAAATTTGATCTGGCAGATGTAAAAGGTCAGCTACGCCCACGTCGCGCACTAGAAATAGCCGCCGCGGGAGGACACTCTC
TGCTCTTTAAAGGACCACCAGGCACAGGTAAGACTTTACTCGCTTCACGTCTTCCTTCAATTTTGCCACCTCTTTCTAAT
CAAGAAACACTTGAAGTTGCGAGTATTTATTCGATTTCAAATACACCGCATACTTTTGGTCAACGTCCATTTCGAGCGCC
CCATCATACAGCATCAGCGATTGCACTCGTTGGGGGCGGCTCTCACCCCAAACCCGGCGAAATTACCCTATCTCACTTAG
GTGTGCTCTTTTTAGATGAACTTCCCGAATTTGATAGAAAAGTGCTTGAAGTCTTACGCCAGCCGCTTGAGTCAAAAGAA
ATTATTATTTCACGAGCAGCTCGGCAAATTACTTATCCGGCTAACTTCCAACTGATTGCAGCGATGAACCCCTGCCCATG
TGGCTACGCATTTAATCAAGACAGCCGTTGCCAATGTTCGCCTGAAAGTATTAAGCGCTATCAGAACCGTATATCTGGAC
CGTTACTTGACCGTATTGATTTACATATTGATGTACCGCCTTTAAAAGCTCAGGAACTGCAAGATCCAACACCTACTGAA
GACTCTACGGCTGTAAGGCAACGCGTGATTTCTGCTTATGAACAACAAATGCAAAGACAAAATTGTTTAAATCAGGCACT
CTCACCGAAGCAACTAGAACAACATGCTGTACTTGATAGTACTTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA
ATCTATCAGCTCGTGCTTATCATCGTGTTTTACGAGTAGCACGGACCATTGCCGATTTGGCTCAAAGTGAGGTGATTCAA
AGCTCTCACCTTACAGAAGCGCTCTCTTATCGCGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.403

100

0.505
  comM Glaesserella parasuis strain SC1401

49.6

100

0.501
  comM Haemophilus influenzae Rd KW20

49.098

100

0.495
  comM Legionella pneumophila str. Paris

48.996

100

0.493
  comM Legionella pneumophila strain ERS1305867

48.996

100

0.493
  comM Vibrio campbellii strain DS40M4

47.677

100

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.813

100

0.475