Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MP622_RS13100 Genome accession   NZ_CP094643
Coordinates   2773007..2774494 (+) Length   495 a.a.
NCBI ID   WP_243791305.1    Uniprot ID   -
Organism   Acinetobacter sp. PK01     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2768007..2779494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP622_RS13075 (MP622_13075) ribD 2768938..2770023 (-) 1086 WP_044738776.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  MP622_RS13080 (MP622_13080) nrdR 2770032..2770493 (-) 462 WP_026441105.1 transcriptional regulator NrdR -
  MP622_RS13085 (MP622_13085) - 2770634..2772037 (-) 1404 WP_044738775.1 ammonium transporter -
  MP622_RS13090 (MP622_13090) glnK 2772096..2772434 (-) 339 WP_016168502.1 P-II family nitrogen regulator -
  MP622_RS13095 (MP622_13095) - 2772713..2772940 (+) 228 WP_016168503.1 accessory factor UbiK family protein -
  MP622_RS13100 (MP622_13100) comM 2773007..2774494 (+) 1488 WP_243791305.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MP622_RS13105 (MP622_13105) - 2774562..2775332 (-) 771 WP_243791306.1 TorF family putative porin -
  MP622_RS13110 (MP622_13110) - 2776561..2777886 (+) 1326 WP_104441225.1 OprD family outer membrane porin -
  MP622_RS13115 (MP622_13115) ppa 2777989..2778513 (-) 525 WP_016168518.1 inorganic diphosphatase -
  MP622_RS13120 (MP622_13120) - 2778625..2779023 (-) 399 WP_104441226.1 MAPEG family protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54687.57 Da        Isoelectric Point: 7.8403

>NTDB_id=670327 MP622_RS13100 WP_243791305.1 2773007..2774494(+) (comM) [Acinetobacter sp. PK01]
MSFAKINTRGLLGLHAPLIEVEVHLSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPSKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPEQNIDHLEFIGELALDGQLRPTTGTLSIAIACQQAQHQLVLPEQNAFEAAQLPHFDVYAAKNL
KEVCEHLSQHKPLSPVQKPVDSPLHRYKFDLADVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLPSILPPLSS
SENLEVASIYSVANTQHHFGHRPFRAPHHTASAIALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQMTYPANFQLIAAMNPCPCGYAFNQDQRCQCSTEAIKRYQNRISGPLLDRIDLHIDVPPLTVHELQEHAPVE
NSDQVRHRVTQAYEQQIQRQNCLNHALNPQQLEQFAGLNEQTKKMLELAQQRLNLSARAYHRVLRVARTIADLANSVEIQ
TGHLSEALSYRQQSL

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=670327 MP622_RS13100 WP_243791305.1 2773007..2774494(+) (comM) [Acinetobacter sp. PK01]
ATGTCTTTTGCCAAAATAAATACGCGAGGGCTATTGGGTCTGCACGCCCCACTGATTGAAGTCGAAGTTCATTTAAGTCA
AGGATTACCATCACTTACCATTGTAGGATTAGCAGAAGCTGCTGTTCGGGAAAGTAAAGATCGGGTTCGTTCAGCCATTA
TTAATAGTGGCTTTCAATTCCCAAGTAAGCGACTCACGATTAATCTCGCACCCGCAGATTTGCCCAAAGATGGTTCACGC
CTAGATTTACCGATAGCGTTGGGTATTTTAATTGCATCTGGGCAACTCCCAGAACAAAATATCGATCATCTTGAATTTAT
TGGAGAATTGGCACTAGATGGTCAATTACGTCCAACCACTGGGACTTTAAGTATTGCCATCGCATGTCAGCAAGCTCAGC
ACCAATTGGTTTTGCCCGAACAAAATGCATTTGAAGCAGCACAACTACCCCATTTTGATGTGTATGCAGCAAAAAATCTC
AAAGAAGTTTGTGAACACTTAAGCCAACACAAACCGTTATCTCCAGTGCAAAAGCCTGTCGACTCGCCTTTACATCGCTA
TAAATTTGATCTGGCTGATGTGAAAGGACAACTTCGTCCACGGCGTGCTTTAGAAATTGCAGCAGCAGGTGGTCACTCCT
TACTGTTTCGCGGCCCCCCTGGCACAGGCAAAACCTTATTGGCATCGCGTCTACCTAGTATTCTTCCACCGCTCAGTTCT
AGTGAAAATTTAGAAGTAGCCAGTATTTATTCTGTTGCCAATACGCAGCATCATTTTGGACACCGCCCTTTTCGCGCGCC
ACATCATACTGCTTCAGCCATTGCATTGGTGGGTGGCGGTTCACATCCTAAACCAGGCGAAATTACTTTAGCCCATTTAG
GCGTTCTATTTTTAGATGAACTTCCTGAATTTGATCGTAAAGTCTTGGAAGTACTTAGACAGCCTTTAGAATCTAAAGAA
ATTGTGATTTCTCGGGCATCCCGTCAAATGACTTATCCTGCCAATTTTCAGTTAATCGCGGCCATGAATCCTTGTCCATG
TGGCTATGCGTTTAATCAGGATCAACGTTGTCAATGTTCCACAGAGGCCATCAAACGTTATCAAAATCGAATTTCTGGTC
CCCTATTAGATCGGATAGATTTGCATATTGATGTACCACCGCTTACGGTACATGAATTACAAGAACATGCACCTGTTGAA
AACTCTGATCAAGTGCGTCATCGTGTGACTCAAGCCTACGAGCAACAAATTCAACGACAAAATTGTTTAAATCATGCTTT
GAATCCACAACAACTGGAACAATTTGCAGGATTGAATGAACAAACCAAAAAAATGCTTGAATTGGCTCAACAACGTTTAA
ATTTATCTGCACGGGCCTATCATCGGGTATTAAGAGTTGCCAGAACCATTGCTGACCTAGCAAATTCTGTTGAAATTCAA
ACTGGACATTTAAGTGAAGCTCTATCGTATCGGCAGCAAAGCCTTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

50.402

100

0.507
  comM Legionella pneumophila strain ERS1305867

50.402

100

0.507
  comM Vibrio campbellii strain DS40M4

50.707

100

0.507
  comM Vibrio cholerae strain A1552

50.505

100

0.505
  comM Glaesserella parasuis strain SC1401

49.501

100

0.501
  comM Haemophilus influenzae Rd KW20

49.699

100

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.614

100

0.473