Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MST18_RS01045 Genome accession   NZ_CP094555
Coordinates   222877..224367 (-) Length   496 a.a.
NCBI ID   WP_180133267.1    Uniprot ID   -
Organism   Acinetobacter sp. YH12068_T     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 217877..229367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST18_RS01025 (MST18_01025) ppa 218280..218816 (+) 537 WP_078189469.1 inorganic diphosphatase -
  MST18_RS01030 (MST18_01030) - 218920..220212 (-) 1293 WP_180084509.1 OprD family outer membrane porin -
  MST18_RS01035 (MST18_01035) - 220929..221705 (+) 777 WP_180133268.1 TorF family putative porin -
  MST18_RS01040 (MST18_01040) - 222102..222833 (+) 732 WP_180127000.1 TorF family putative porin -
  MST18_RS01045 (MST18_01045) comM 222877..224367 (-) 1491 WP_180133267.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MST18_RS01050 (MST18_01050) - 224434..224661 (-) 228 WP_078189551.1 accessory factor UbiK family protein -
  MST18_RS01055 (MST18_01055) glnK 224940..225278 (+) 339 WP_067763174.1 P-II family nitrogen regulator -
  MST18_RS01060 (MST18_01060) - 225340..226731 (+) 1392 WP_078189464.1 ammonium transporter -
  MST18_RS01065 (MST18_01065) nrdR 226870..227328 (+) 459 WP_067763170.1 transcriptional regulator NrdR -
  MST18_RS01070 (MST18_01070) ribD 227365..228468 (+) 1104 WP_180133266.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 53992.68 Da        Isoelectric Point: 7.4579

>NTDB_id=670155 MST18_RS01045 WP_180133267.1 222877..224367(-) (comM) [Acinetobacter sp. YH12068_T]
MSFAKIYTRGLLGLNAPQIEVEVHVSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLAIALGILIASGQLPENAADGFEFIGELALDGYLRPVSGILSIAIACQHIGHHLILPALNADEAAQLPEFQVFPAQHL
KDVCEHLSRSALISSHPSTSSANQHSYPFDLSDVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLPSILPPLDM
QENLQVASIYSIAGANHHFGQRPFRAPHHTASAIALVGGGSNPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDSRCQCSAESIKRYQNRISGPLLDRIDLHIDVPPLAAHELQSSQEVE
SSSAVRHRVIQAYALQIERQQKSNMALTPTQLEQQAVLDATAQNILQLAQQRMNLSARAYHRVLRVARTIADLAQSEHIQ
AQHVSEALSYRSQLNA

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=670155 MST18_RS01045 WP_180133267.1 222877..224367(-) (comM) [Acinetobacter sp. YH12068_T]
ATGTCTTTTGCCAAAATCTATACTCGGGGTTTGCTCGGCTTAAATGCACCCCAAATTGAAGTTGAAGTCCATGTCAGCCA
AGGTCTGCCTTCATTGACCATTGTTGGCCTACCTGAGGCCGCCGTCCGTGAAAGTAAAGACCGTGTCCGCTCTGCGATTA
TTAATAGCGGCTTTCAGTTCCCAACCAAACGTCTGACCATTAATCTTGCACCCGCAGATTTACCGAAAGATGGTTCACGT
TTAGATCTCGCCATTGCTTTAGGGATTCTGATCGCGTCGGGACAACTTCCTGAAAATGCAGCAGATGGTTTTGAATTTAT
TGGAGAATTAGCACTTGATGGTTATTTACGACCTGTCAGTGGCATCTTAAGCATAGCCATTGCCTGTCAGCATATCGGGC
ATCATCTGATTCTACCGGCACTCAATGCCGATGAAGCGGCGCAACTGCCGGAGTTCCAAGTTTTTCCTGCACAGCATCTT
AAGGATGTATGTGAACATTTGAGTCGTTCGGCCTTAATCAGTAGCCATCCCTCGACATCGTCAGCCAATCAACACAGTTA
CCCTTTTGATTTATCTGATGTGAAAGGTCAACTCAGACCACGTCGTGCTTTAGAAATTGCCGCGGCTGGCGGTCATTCTC
TACTATTTCGGGGCCCACCAGGCACAGGCAAAACGCTACTCGCCTCGCGTTTACCCAGTATTCTGCCCCCCTTAGATATG
CAAGAAAATTTGCAAGTCGCGAGTATTTATTCCATTGCAGGTGCAAATCATCATTTTGGGCAGCGTCCATTTCGTGCGCC
ACACCATACCGCATCTGCGATTGCCCTCGTCGGTGGAGGATCAAATCCTAAACCGGGTGAAATCACCTTGGCACATTTAG
GAGTTTTATTTTTAGATGAGCTGCCTGAATTTGATCGAAAGGTGTTGGAGGTGTTACGGCAACCACTCGAATCCAAGGAA
ATTGTGATTTCACGGGCTTCTCGTCAAATCACCTTCCCTGCAAATTTTCAACTAATTGCGGCGATGAATCCTTGCCCATG
TGGCTATGCCTTTAACCAAGACAGCCGCTGTCAATGTAGTGCTGAAAGTATTAAACGCTATCAAAACCGTATTTCAGGTC
CATTATTAGATCGAATTGACTTACATATTGATGTCCCGCCACTGGCAGCGCATGAATTACAAAGTTCGCAAGAGGTTGAA
AGTTCAAGTGCGGTTAGGCATCGTGTTATACAAGCTTATGCGTTACAAATAGAACGTCAGCAAAAATCCAATATGGCACT
CACGCCGACGCAATTGGAACAACAAGCGGTTTTGGATGCTACTGCGCAGAATATTTTACAGTTAGCACAGCAACGAATGA
ATTTATCTGCGCGTGCTTATCATCGGGTATTACGTGTTGCCAGAACCATTGCCGACTTGGCTCAAAGTGAACACATTCAA
GCTCAACACGTATCTGAAGCGCTGTCTTATCGAAGCCAACTCAATGCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.806

100

0.508
  comM Legionella pneumophila str. Paris

49.4

100

0.498
  comM Legionella pneumophila strain ERS1305867

49.4

100

0.498
  comM Haemophilus influenzae Rd KW20

49.203

100

0.498
  comM Glaesserella parasuis strain SC1401

49.2

100

0.496
  comM Vibrio campbellii strain DS40M4

49.194

100

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.726

100

0.464