Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MST17_RS01110 Genome accession   NZ_CP094545
Coordinates   239154..240644 (-) Length   496 a.a.
NCBI ID   WP_180026518.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16056_T     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 234154..245644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST17_RS01090 (MST17_01090) ppa 234521..235057 (+) 537 WP_078189469.1 inorganic diphosphatase -
  MST17_RS01095 (MST17_01095) - 235164..236483 (-) 1320 WP_180026517.1 OprD family outer membrane porin -
  MST17_RS01100 (MST17_01100) - 237200..237976 (+) 777 WP_168378237.1 TorF family putative porin -
  MST17_RS01105 (MST17_01105) - 238373..239110 (+) 738 WP_180008086.1 TorF family putative porin -
  MST17_RS01110 (MST17_01110) comM 239154..240644 (-) 1491 WP_180026518.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MST17_RS01115 (MST17_01115) - 240711..240938 (-) 228 WP_078189551.1 accessory factor UbiK family protein -
  MST17_RS01120 (MST17_01120) glnK 241217..241555 (+) 339 WP_067763174.1 P-II family nitrogen regulator -
  MST17_RS01125 (MST17_01125) - 241617..243023 (+) 1407 WP_180026519.1 ammonium transporter -
  MST17_RS01130 (MST17_01130) nrdR 243162..243620 (+) 459 WP_067763170.1 transcriptional regulator NrdR -
  MST17_RS01135 (MST17_01135) ribD 243657..244760 (+) 1104 WP_180026520.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 54098.76 Da        Isoelectric Point: 7.4579

>NTDB_id=670116 MST17_RS01110 WP_180026518.1 239154..240644(-) (comM) [Acinetobacter sp. YH16056_T]
MSFAKIYTRGLLGLNAPQIEVEVHVSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLAIALGILIASGQLPENAADGFEFIGELALDGYLRPVSGILSIAIACQHIGHHLILPALNADEAAQLPEFQVFPAQHL
KDVCEHLSRSALISSHPSTSSANQHSYPFDLSDVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLASILPPLDM
QENLQVASIYSIAGANHHFGQRPFRAPHHTASAIALVGGGSNPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDSRCQCSAESIKRYQNRISGPLLDRIDLHIDVPPLAAHELQSSQEVE
SSSTVRHRVIRAYELQIDRQQKSNMALTPTQLEQQAVLDATAQNILQLAQQRMNLSARAYHRVLRVARTIADLAQSEHIQ
AQHVSEALSYRSQLNT

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=670116 MST17_RS01110 WP_180026518.1 239154..240644(-) (comM) [Acinetobacter sp. YH16056_T]
ATGTCTTTTGCCAAAATCTATACTCGGGGTTTGCTCGGCTTAAATGCACCCCAAATTGAAGTTGAAGTTCATGTCAGCCA
AGGCCTACCGTCATTGACCATTGTGGGCCTACCTGAGGCCGCCGTCCGTGAAAGTAAAGACCGTGTCCGCTCTGCGATTA
TTAATAGCGGCTTTCAGTTTCCGACCAAACGTCTGACCATTAATCTAGCACCCGCAGATTTACCCAAAGATGGTTCACGT
TTAGATCTCGCCATTGCTTTAGGGATTCTGATCGCGTCGGGACAACTTCCTGAAAATGCAGCAGATGGTTTTGAATTTAT
TGGAGAATTGGCACTTGATGGTTATTTACGACCTGTCAGTGGCATCTTAAGTATAGCCATTGCCTGTCAGCATATCGGGC
ATCATCTGATTCTACCGGCACTCAATGCCGATGAAGCGGCACAACTGCCGGAGTTCCAAGTCTTTCCTGCACAGCATCTT
AAGGATGTGTGTGAACATTTAAGTCGTTCAGCCTTAATCAGTAGCCATCCCTCGACATCGTCAGCCAATCAACACAGTTA
TCCCTTTGATTTATCTGATGTGAAAGGTCAACTCAGACCACGTCGTGCTTTAGAAATTGCGGCTGCAGGCGGTCACTCCC
TACTATTTCGTGGCCCTCCGGGCACAGGCAAAACTCTACTCGCCTCGCGTTTGGCTAGTATTCTGCCCCCCTTAGATATG
CAAGAAAATTTGCAAGTCGCGAGTATTTATTCCATTGCAGGTGCAAATCATCATTTTGGGCAACGTCCATTTCGTGCGCC
ACACCATACGGCATCTGCGATTGCCCTCGTCGGTGGAGGATCAAATCCTAAACCGGGTGAAATCACCTTGGCACATTTAG
GGGTTTTATTTTTAGATGAGCTGCCTGAATTTGATCGAAAGGTGTTGGAGGTATTACGGCAACCACTCGAATCCAAAGAA
ATTGTGATTTCAAGGGCTTCTCGTCAAATCACTTTCCCTGCAAATTTTCAACTGATTGCGGCGATGAATCCTTGCCCATG
TGGCTATGCCTTCAACCAAGACAGCCGCTGTCAATGTAGTGCTGAAAGTATTAAACGCTATCAAAACCGTATTTCAGGTC
CATTATTAGATCGTATTGACTTACATATAGATGTCCCGCCACTGGCAGCGCATGAATTACAAAGTTCGCAAGAGGTTGAA
AGCTCAAGTACGGTTAGGCATCGTGTCATTCGTGCCTATGAGTTACAAATAGATCGCCAGCAAAAATCCAATATGGCACT
GACGCCGACGCAATTGGAGCAACAAGCAGTTTTGGATGCTACTGCACAGAATATTTTACAGTTAGCCCAGCAGAGAATGA
ATTTATCTGCGCGTGCCTATCATCGGGTGTTACGTGTTGCCAGAACCATTGCCGACTTGGCTCAAAGTGAACACATTCAA
GCTCAGCACGTTTCTGAAGCACTGTCCTATCGAAGCCAGCTCAATACTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.806

100

0.508
  comM Glaesserella parasuis strain SC1401

49.4

100

0.498
  comM Legionella pneumophila str. Paris

49.4

100

0.498
  comM Legionella pneumophila strain ERS1305867

49.4

100

0.498
  comM Haemophilus influenzae Rd KW20

49.203

100

0.498
  comM Vibrio campbellii strain DS40M4

48.992

100

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.527

100

0.462