Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MST16_RS15710 Genome accession   NZ_CP094541
Coordinates   3183929..3185419 (+) Length   496 a.a.
NCBI ID   WP_168378235.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16040_T     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3178929..3190419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST16_RS15685 (MST16_15655) ribD 3179813..3180916 (-) 1104 WP_180092178.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  MST16_RS15690 (MST16_15660) nrdR 3180953..3181411 (-) 459 WP_067763170.1 transcriptional regulator NrdR -
  MST16_RS15695 (MST16_15665) - 3181550..3182956 (-) 1407 WP_180008071.1 ammonium transporter -
  MST16_RS15700 (MST16_15670) glnK 3183018..3183356 (-) 339 WP_067763174.1 P-II family nitrogen regulator -
  MST16_RS15705 (MST16_15675) - 3183635..3183862 (+) 228 WP_078189551.1 accessory factor UbiK family protein -
  MST16_RS15710 (MST16_15680) comM 3183929..3185419 (+) 1491 WP_168378235.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MST16_RS15715 (MST16_15685) - 3185463..3186200 (-) 738 WP_180064896.1 TorF family putative porin -
  MST16_RS15720 (MST16_15690) - 3186597..3187373 (-) 777 WP_180064897.1 TorF family putative porin -
  MST16_RS15725 (MST16_15695) - 3187597..3187992 (+) 396 WP_257245633.1 transposase family protein -
  MST16_RS15730 (MST16_15700) - 3187940..3188410 (+) 471 WP_039254797.1 IS5/IS1182 family transposase -
  MST16_RS15735 (MST16_15705) - 3189000..3190340 (+) 1341 WP_180005203.1 OprD family outer membrane porin -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 54068.74 Da        Isoelectric Point: 7.4579

>NTDB_id=670109 MST16_RS15710 WP_168378235.1 3183929..3185419(+) (comM) [Acinetobacter sp. YH16040_T]
MSFAKIYTRGLLGLNAPQIEVEVHVSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLAIALGILIASGQLPENAADGFEFIGELALDGYLRPVSGILSIAIACQHIGHHLILPALNADEAAQLPEFQVFPAQHL
KDVCEHLSRSALISSHPSTSSANQHSYPFDLSDVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLASILPPLDM
QENLQVASIYSIAGANHHFGQRPFRAPHHTASAIALVGGGSNPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDSRCQCSAESIKRYQNRISGPLLDRIDLHIDVPPLAAHELQSSQEVE
SSSTVRHRVIRAYELQIDRQQKSNMALTPTQLEQQAVLDATAQNILQLAQQRMNLSARAYHRVLRVARTIADLAQSEHIQ
AQHVSEALSYRSQLNA

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=670109 MST16_RS15710 WP_168378235.1 3183929..3185419(+) (comM) [Acinetobacter sp. YH16040_T]
ATGTCTTTTGCCAAAATCTATACTCGGGGTTTGCTCGGCTTAAATGCACCCCAAATTGAAGTTGAAGTTCATGTCAGCCA
AGGCCTACCGTCATTGACCATTGTGGGCCTACCTGAGGCCGCCGTCCGTGAAAGTAAAGACCGTGTCCGCTCTGCGATTA
TTAATAGCGGCTTTCAGTTTCCGACCAAACGTCTGACCATTAATCTAGCACCCGCAGATTTACCCAAAGATGGTTCACGT
TTAGATCTCGCCATTGCTTTAGGGATTCTGATCGCGTCGGGACAACTTCCTGAAAATGCAGCAGATGGTTTTGAATTTAT
TGGAGAATTGGCACTTGATGGTTATTTACGACCTGTCAGTGGCATCTTAAGTATAGCCATTGCCTGTCAGCATATCGGGC
ATCATCTGATTCTACCGGCACTCAATGCCGATGAAGCGGCGCAACTGCCGGAGTTCCAAGTCTTTCCTGCTCAGCATCTT
AAGGATGTATGTGAACATTTGAGTCGTTCAGCCTTAATCAGCAGCCACCCCTCGACATCGTCAGCCAATCAACACAGTTA
CCCTTTTGATTTATCTGATGTGAAAGGTCAACTGAGACCACGTCGTGCTTTAGAAATTGCGGCGGCTGGCGGTCATTCCC
TGCTATTTCGTGGCCCTCCAGGCACAGGTAAAACTCTACTCGCCTCGCGTTTAGCCAGCATTCTTCCGCCCTTAGATATG
CAAGAAAATTTGCAAGTCGCGAGTATTTATTCCATTGCAGGTGCAAATCATCATTTTGGGCAGCGTCCATTTCGTGCGCC
GCACCATACGGCATCTGCGATTGCCCTCGTCGGTGGAGGATCAAATCCTAAACCGGGTGAAATCACCTTGGCACATTTAG
GGGTTTTATTTTTAGATGAGCTGCCTGAATTTGATCGAAAGGTGTTGGAGGTATTACGGCAACCACTCGAATCCAAAGAA
ATTGTGATTTCACGGGCTTCTCGTCAAATCACTTTCCCTGCAAATTTTCAATTGATCGCAGCAATGAATCCTTGCCCTTG
TGGCTATGCCTTTAACCAAGACAGCCGCTGTCAATGTAGTGCTGAAAGTATTAAACGCTATCAAAACCGTATTTCAGGTC
CATTATTAGATCGTATTGATTTACATATAGATGTCCCGCCACTGGCAGCGCATGAATTACAAAGTTCGCAAGAGGTTGAA
AGCTCAAGTACGGTTAGGCATCGTGTCATTCGTGCCTATGAGTTACAAATAGATCGCCAGCAAAAATCCAATATGGCACT
GACGCCGACGCAATTGGAACAACAAGCAGTTTTGGATGCTACTGCACAGAATATTTTACAGTTAGCCCAGCAGAGAATGA
ATTTATCTGCGCGTGCCTATCATCGGGTGTTACGTGTTGCCAGAACCATTGCCGACTTGGCTCAAAGTGAACACATTCAA
GCTCAACACGTTTCTGAAGCACTGTCCTATCGAAGCCAACTCAATGCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.806

100

0.508
  comM Glaesserella parasuis strain SC1401

49.4

100

0.498
  comM Legionella pneumophila str. Paris

49.4

100

0.498
  comM Legionella pneumophila strain ERS1305867

49.4

100

0.498
  comM Haemophilus influenzae Rd KW20

49.203

100

0.498
  comM Vibrio campbellii strain DS40M4

48.79

100

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.527

100

0.462