Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   MRY16_RS14310 Genome accession   NZ_CP094445
Coordinates   3077344..3078471 (+) Length   375 a.a.
NCBI ID   WP_243483546.1    Uniprot ID   -
Organism   Acinetobacter junii strain A2-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3072344..3083471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRY16_RS14290 (MRY16_14290) - 3072903..3074999 (-) 2097 WP_099949357.1 TonB-dependent copper receptor -
  MRY16_RS14295 (MRY16_14295) - 3075073..3075510 (-) 438 WP_039048136.1 DUF2946 family protein -
  MRY16_RS14300 (MRY16_14300) def 3075532..3076062 (-) 531 WP_004905508.1 peptide deformylase -
  MRY16_RS14305 (MRY16_14305) tsaP 3076183..3077334 (+) 1152 WP_243483544.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  MRY16_RS14310 (MRY16_14310) dprA 3077344..3078471 (+) 1128 WP_243483546.1 DNA-processing protein DprA Machinery gene
  MRY16_RS14315 (MRY16_14315) - 3078509..3079078 (+) 570 WP_099949359.1 Sua5/YciO/YrdC/YwlC family protein -
  MRY16_RS14320 (MRY16_14320) - 3079473..3080393 (-) 921 WP_151973679.1 DMT family transporter -
  MRY16_RS14325 (MRY16_14325) - 3080497..3081162 (-) 666 WP_243483547.1 TetR/AcrR family transcriptional regulator -
  MRY16_RS14330 (MRY16_14330) - 3081292..3082512 (+) 1221 WP_243483549.1 MFS transporter -
  MRY16_RS14335 (MRY16_14335) - 3082528..3083301 (+) 774 WP_099949363.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 375 a.a.        Molecular weight: 42379.35 Da        Isoelectric Point: 7.1173

>NTDB_id=669558 MRY16_RS14310 WP_243483546.1 3077344..3078471(+) (dprA) [Acinetobacter junii strain A2-1]
MLNQLSPHHYHTVLVWYLVQHSLSSFHKILKHFGSFEQATQSHRFSEWYQLGLHANHLKRLEEFQSTQGQKQFEQIVQLI
LKHCDFIVTPHDIDYPKQLMPYADHPPILFGQGHLQALLQPQIALVGSRKPSPHGRQVAYDFAYYLSEKGFYITSGLAHG
IDEAAHRGGLAHHRSIAVTGTGLDTIYPTQNKPLAQQIAQSGAIITEFLPTTLPLQQHFPRRNRIVSGLSLGVLVVEAAL
KSGSLITANEAANQGKMVFAIPGHIYSEYHQGCHQLIREGAVLVDHPEQIIEDLALPTHWQTQQHTKDALEQHSTLPPHL
ISLYQNLDWIGQDLDLLSQRYPAPISEITSQLMELELLGLCIQQGGRYLRCRPIH

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=669558 MRY16_RS14310 WP_243483546.1 3077344..3078471(+) (dprA) [Acinetobacter junii strain A2-1]
ATGTTGAATCAATTATCACCCCACCACTACCATACCGTGTTGGTGTGGTATTTGGTTCAACATTCCCTATCCAGCTTTCA
CAAAATTCTGAAACATTTTGGGAGTTTTGAACAAGCAACACAAAGCCACCGATTCTCTGAGTGGTATCAACTCGGTTTAC
ATGCAAACCATCTAAAACGCTTAGAAGAATTTCAAAGTACACAAGGTCAAAAACAATTTGAACAGATAGTTCAACTGATT
TTGAAGCACTGTGACTTTATCGTGACGCCACACGATATTGACTATCCCAAACAACTCATGCCTTATGCAGATCATCCCCC
CATATTATTTGGTCAAGGTCATCTTCAGGCTTTACTGCAACCGCAAATTGCATTGGTGGGGAGTCGCAAACCTAGTCCAC
ATGGTCGCCAAGTAGCTTATGATTTTGCTTATTACCTTAGTGAGAAAGGATTTTATATTACCAGTGGTCTTGCCCATGGG
ATTGATGAAGCTGCTCATCGCGGTGGCTTAGCACATCATCGAAGCATTGCTGTCACAGGTACGGGGTTAGATACCATTTA
TCCCACTCAAAATAAACCATTGGCACAGCAAATTGCTCAATCAGGTGCCATCATCACAGAATTTCTTCCTACGACCCTGC
CATTACAACAACATTTTCCACGACGAAATCGGATTGTTAGTGGCTTAAGTTTAGGTGTCTTAGTGGTTGAAGCAGCACTA
AAAAGTGGATCGTTGATTACGGCGAATGAAGCAGCCAATCAAGGTAAAATGGTATTTGCTATCCCTGGTCATATTTACAG
TGAATACCATCAAGGCTGTCATCAACTTATTCGTGAAGGGGCTGTTTTGGTCGATCATCCTGAACAGATTATTGAAGATT
TAGCATTACCTACACATTGGCAGACCCAACAACACACTAAAGATGCATTAGAACAGCACTCAACACTTCCGCCACATTTG
ATTAGCTTGTATCAGAATTTAGATTGGATTGGACAGGATTTAGATTTACTCAGCCAACGCTATCCAGCGCCGATCTCTGA
AATCACATCTCAATTAATGGAATTAGAGTTACTAGGTTTGTGCATACAACAAGGTGGTCGCTATTTACGTTGTCGCCCAA
TCCATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

72.8

100

0.728

  dprA Acinetobacter baumannii strain A118

71.733

100

0.717

  dprA Acinetobacter baylyi ADP1

69.211

100

0.701

  dprA Vibrio cholerae strain A1552

43.363

90.4

0.392


Multiple sequence alignment