Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   MRY16_RS14305 Genome accession   NZ_CP094445
Coordinates   3076183..3077334 (+) Length   383 a.a.
NCBI ID   WP_243483544.1    Uniprot ID   -
Organism   Acinetobacter junii strain A2-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3071183..3082334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRY16_RS14285 (MRY16_14285) - 3072095..3072856 (+) 762 WP_004905498.1 hypothetical protein -
  MRY16_RS14290 (MRY16_14290) - 3072903..3074999 (-) 2097 WP_099949357.1 TonB-dependent copper receptor -
  MRY16_RS14295 (MRY16_14295) - 3075073..3075510 (-) 438 WP_039048136.1 DUF2946 family protein -
  MRY16_RS14300 (MRY16_14300) def 3075532..3076062 (-) 531 WP_004905508.1 peptide deformylase -
  MRY16_RS14305 (MRY16_14305) tsaP 3076183..3077334 (+) 1152 WP_243483544.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  MRY16_RS14310 (MRY16_14310) dprA 3077344..3078471 (+) 1128 WP_243483546.1 DNA-processing protein DprA Machinery gene
  MRY16_RS14315 (MRY16_14315) - 3078509..3079078 (+) 570 WP_099949359.1 Sua5/YciO/YrdC/YwlC family protein -
  MRY16_RS14320 (MRY16_14320) - 3079473..3080393 (-) 921 WP_151973679.1 DMT family transporter -
  MRY16_RS14325 (MRY16_14325) - 3080497..3081162 (-) 666 WP_243483547.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41860.96 Da        Isoelectric Point: 9.0745

>NTDB_id=669557 MRY16_RS14305 WP_243483544.1 3076183..3077334(+) (tsaP) [Acinetobacter junii strain A2-1]
MKKVLNGIHSFHALGLKKQLIAVAICAGLGMTVNITHAASPNVSPPSVKAGAPHVYVVKKGDTLWDISGKFLSKPWRWPE
IWASNKHVKNPHWIYPGDRLLLCSLNGKPLIGKDEGDGCDGIIRRYTGGGTTLRPQVRIEALNNSVPVIPLAHIQQWLER
SSVLQADAIANTPYILGTADNRVLAGKGQSVYVRGQGLENGQRYGVYREGEPYIVVDEQGKKQNLGVELLQVASGVAVRN
ENDITTVELTDSYNGEVRRGDRVMLEQEAMLPTLFYPIDAKQVRDGGKVIRVLGSIGTAAKNGVVTVDRGTADGVEIGQV
FSTYQEGEIVQDPKTKEKVKLPGQYVGSLMIFKSFDRISYAYVLESELPIKVGSNIQPPRLDD

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=669557 MRY16_RS14305 WP_243483544.1 3076183..3077334(+) (tsaP) [Acinetobacter junii strain A2-1]
ATGAAAAAGGTTTTAAACGGCATACACTCATTTCATGCCTTGGGGTTAAAAAAACAACTGATTGCTGTTGCCATCTGTGC
AGGATTAGGCATGACGGTAAATATAACGCATGCAGCAAGCCCTAATGTTAGCCCACCCTCTGTCAAAGCTGGGGCACCAC
ATGTCTATGTAGTGAAAAAAGGCGATACCCTTTGGGATATCTCAGGCAAGTTTTTAAGTAAACCATGGCGCTGGCCAGAA
ATTTGGGCAAGCAATAAACACGTTAAGAATCCTCACTGGATTTATCCAGGTGACCGTTTACTACTCTGTAGTTTGAATGG
CAAACCGTTAATCGGTAAAGATGAAGGTGACGGCTGTGACGGTATTATTCGTCGTTATACAGGTGGCGGAACAACTTTAC
GTCCGCAAGTACGTATTGAAGCATTGAACAATAGTGTGCCAGTTATTCCATTGGCTCATATTCAACAATGGTTAGAACGT
AGTTCAGTATTACAAGCGGATGCGATTGCGAATACCCCTTATATCTTAGGCACAGCTGACAATCGCGTACTTGCAGGCAA
AGGGCAAAGTGTTTACGTTCGTGGTCAAGGTCTAGAAAATGGTCAGCGTTATGGCGTTTACCGTGAAGGTGAACCTTACA
TCGTTGTCGATGAGCAAGGCAAAAAACAAAACCTAGGTGTTGAATTACTTCAAGTCGCATCTGGTGTTGCTGTGCGCAAT
GAAAACGACATTACAACGGTTGAACTCACTGATAGCTATAACGGCGAAGTTCGTCGTGGTGATCGCGTGATGCTTGAACA
AGAGGCAATGTTGCCAACCTTGTTCTATCCTATCGATGCAAAACAAGTGCGCGATGGCGGTAAAGTGATTCGTGTATTAG
GATCGATTGGTACAGCCGCAAAAAATGGTGTTGTCACTGTTGATCGCGGTACTGCTGATGGCGTTGAAATTGGTCAAGTC
TTTAGCACTTACCAAGAGGGTGAGATCGTACAAGATCCAAAAACTAAAGAGAAAGTTAAATTACCTGGACAATATGTGGG
TAGCTTGATGATCTTCAAGAGTTTTGATCGTATCAGCTATGCCTACGTTTTAGAAAGTGAACTACCAATCAAGGTCGGTT
CAAACATCCAACCACCACGCTTGGATGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(56-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

72.656

100

0.728

Multiple sequence alignment