Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MRY16_RS14045 Genome accession   NZ_CP094445
Coordinates   3016815..3018302 (+) Length   495 a.a.
NCBI ID   WP_243483516.1    Uniprot ID   -
Organism   Acinetobacter junii strain A2-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3011815..3023302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRY16_RS14020 (MRY16_14020) ribD 3012676..3013776 (-) 1101 WP_243483514.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  MRY16_RS14025 (MRY16_14025) nrdR 3013789..3014253 (-) 465 WP_004957298.1 transcriptional regulator NrdR -
  MRY16_RS14030 (MRY16_14030) - 3014424..3015836 (-) 1413 WP_004917056.1 ammonium transporter -
  MRY16_RS14035 (MRY16_14035) glnK 3015904..3016242 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  MRY16_RS14040 (MRY16_14040) - 3016518..3016745 (+) 228 WP_004917059.1 accessory factor UbiK family protein -
  MRY16_RS14045 (MRY16_14045) comM 3016815..3018302 (+) 1488 WP_243483516.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MRY16_RS14050 (MRY16_14050) - 3018338..3019126 (-) 789 WP_243483518.1 TorF family putative porin -
  MRY16_RS14055 (MRY16_14055) - 3019472..3020242 (-) 771 WP_243483519.1 TorF family putative porin -
  MRY16_RS14060 (MRY16_14060) - 3020983..3022311 (+) 1329 WP_004957264.1 OprD family outer membrane porin -
  MRY16_RS14065 (MRY16_14065) ppa 3022417..3022944 (-) 528 WP_004957263.1 inorganic diphosphatase -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54393.06 Da        Isoelectric Point: 7.9557

>NTDB_id=669556 MRY16_RS14045 WP_243483516.1 3016815..3018302(+) (comM) [Acinetobacter junii strain A2-1]
MSFAKIYTRGLLGLHAPQIEVEVHISSGLPSLTIVGLPEAAVRESKDRVRSAIINSGFLFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEGFEFIGELALDGHLRPTSGALTIAMACQQAKHHLVLPESNVDEANQLEDFQVYPAKHL
QDVCAHFSGSSQIKAAPQRSISSLSQYQYDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLNA
QENLEVASIYSVANAQHHFGQRPFRAPHHTASAIALVGGGSQPKPREITLAHRGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRAARQMTFPANFQFIAAMNPCPCGYAFNQDSRCQCSPESIQRYQNRISGPLLDRIDLHIDVPPLQAQELQDQKPSE
NSETVRHRVIKAYQQQIKRQQCLNQALSPQLLDQHARLDEGSAKIIEMAQQRLNLSARAYHRVLRVARTIADLAESDIIS
SSHLTEALSYRGSNS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=669556 MRY16_RS14045 WP_243483516.1 3016815..3018302(+) (comM) [Acinetobacter junii strain A2-1]
ATGTCTTTTGCAAAAATTTATACAAGGGGATTATTGGGGCTACATGCCCCTCAAATCGAGGTCGAAGTTCATATCAGTTC
TGGCCTACCGTCTTTAACCATCGTGGGTTTACCTGAAGCAGCCGTCCGAGAAAGTAAAGATCGCGTTCGATCCGCAATAA
TTAATAGTGGTTTTCTTTTCCCAACCAAACGCTTAACCATCAATTTAGCACCTGCAGACTTGCCCAAAGATGGGTCACGA
CTTGACCTGCCAATTGCATTGGGGATTTTAATCGCTTCAGGTCAGCTTCCTGAAAATTGTACCGAAGGATTTGAATTTAT
TGGTGAACTTGCTTTGGATGGTCATTTACGTCCAACTTCAGGGGCATTAACTATTGCTATGGCTTGTCAGCAAGCTAAGC
ATCATTTAGTTCTTCCTGAATCAAATGTGGACGAGGCAAATCAACTAGAAGACTTTCAAGTTTATCCTGCCAAACATTTA
CAAGATGTATGTGCACATTTTTCGGGCAGTAGCCAAATAAAAGCCGCACCACAACGATCTATTTCATCATTATCACAATA
TCAATACGATCTTGCCGATGTTAAAGGTCAGCTTCGTCCACGCCGAGCATTAGAAATTGCGGCTGCAGGAGGTCATTCAT
TACTCTTTAAAGGACCACCTGGCACTGGAAAAACATTACTTGCATCTCGACTACCTTCAATTTTACCCCCTTTGAATGCT
CAAGAAAATTTAGAGGTTGCTAGTATCTATTCCGTAGCAAATGCTCAACATCATTTCGGTCAGCGCCCTTTTCGTGCACC
TCACCATACAGCATCTGCGATCGCTTTGGTTGGTGGAGGCTCTCAACCAAAACCAAGAGAAATTACGCTTGCTCATCGCG
GCGTTTTGTTTTTAGATGAATTACCTGAATTCGACCGCAAAGTGCTTGAAGTTCTGCGCCAACCTTTAGAGTCTAAAGAA
ATCGTAATTTCTCGCGCGGCGAGACAAATGACCTTCCCTGCAAATTTTCAGTTTATCGCTGCAATGAATCCATGCCCTTG
TGGATATGCATTTAATCAAGATAGTCGTTGTCAGTGTTCGCCTGAAAGTATTCAACGTTATCAAAATCGAATTTCAGGTC
CACTTTTGGATCGAATCGATCTGCATATCGATGTTCCACCCTTGCAAGCTCAAGAGCTACAAGACCAAAAACCCTCAGAA
AACTCTGAAACTGTTCGTCATCGAGTGATAAAAGCATATCAACAACAGATCAAAAGACAGCAATGCTTAAACCAAGCGCT
TTCACCCCAACTTTTGGATCAACATGCTCGTTTAGACGAGGGATCTGCAAAAATTATTGAAATGGCACAACAAAGATTAA
ATCTATCGGCCCGTGCTTATCATCGGGTACTTCGCGTTGCAAGAACGATTGCTGACTTAGCTGAGAGTGACATAATATCT
AGCTCACATTTAACAGAAGCCTTGTCTTATCGAGGTAGCAATAGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.406

100

0.517
  comM Glaesserella parasuis strain SC1401

50.2

100

0.507
  comM Vibrio campbellii strain DS40M4

49.697

100

0.497
  comM Haemophilus influenzae Rd KW20

49.098

100

0.495
  comM Legionella pneumophila str. Paris

47.992

100

0.483
  comM Legionella pneumophila strain ERS1305867

47.992

100

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.418

100

0.461

Multiple sequence alignment