Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MTP24_RS15190 Genome accession   NZ_CP094441
Coordinates   3285949..3287457 (-) Length   502 a.a.
NCBI ID   WP_006791374.1    Uniprot ID   A0AAD0CCF4
Organism   Pseudoalteromonas sp. APM04     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3280949..3292457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP24_RS15175 (MTP24_15175) - 3281371..3282447 (-) 1077 WP_006791371.1 hemolysin family protein -
  MTP24_RS15180 (MTP24_15180) - 3282532..3285027 (+) 2496 WP_243531999.1 prolyl oligopeptidase family serine peptidase -
  MTP24_RS15185 (MTP24_15185) - 3285211..3285915 (+) 705 WP_006791373.1 response regulator transcription factor -
  MTP24_RS15190 (MTP24_15190) comM 3285949..3287457 (-) 1509 WP_006791374.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MTP24_RS15195 (MTP24_15195) - 3287492..3288106 (-) 615 WP_243532001.1 trimeric intracellular cation channel family protein -
  MTP24_RS15215 (MTP24_15215) cysQ 3288953..3289756 (-) 804 WP_006791377.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  MTP24_RS15220 (MTP24_15220) nudE 3289749..3290321 (-) 573 WP_033035276.1 ADP compounds hydrolase NudE -
  MTP24_RS15225 (MTP24_15225) yrfG 3290384..3291031 (+) 648 WP_243532003.1 GMP/IMP nucleotidase -
  MTP24_RS15230 (MTP24_15230) dcd 3291070..3291588 (-) 519 WP_243532005.1 dCTP deaminase -
  MTP24_RS15235 (MTP24_15235) - 3291593..3292144 (-) 552 WP_243532007.1 hypothetical protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 54986.05 Da        Isoelectric Point: 7.4837

>NTDB_id=669474 MTP24_RS15190 WP_006791374.1 3285949..3287457(-) (comM) [Pseudoalteromonas sp. APM04]
MSLARIYSRAQVGINAPEVIVEVHLGTGLPAFHIVGLPEASVKESKDRVRSALENSQFGFPDQRITVNLAPADLPKDGGR
FDLAIAVGILVASGQIVCPDIHKYEFYGELALNGEVRGVNAILPSVLAAKEQNRCCFLPIANDSLASLVNGVKRKAVSSI
QEVWGDLLNQQPLPLNIEYPDCTQAPDFLLDLSDVKGQPGAKRVLEIAAAGGHNLLFLGPPGTGKSMLAQRMATIMPAMS
DDEALSTAALYSIIGHSIDLTNWRQRPFRNPHHTCSAVALVGGSSNPKPGEISLAHNGVLFLDELPEFERKVLDSLREPM
ETGTVTISRAARQMEFPAQFQLITALNPSPTGSHTDKRATPDQVIRYLSRVSGPFVDRIDLQIELPRLTSVELQSTKQEE
TSAQVRARVEAAYYIQLKRQGKVNARLNNKEMSIHCELAPAELQFLAKASEKLSLSPRSYHRVIKVARTISDLKGNEKIS
LDDLKEALNYRAFERLIAQLTK

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=669474 MTP24_RS15190 WP_006791374.1 3285949..3287457(-) (comM) [Pseudoalteromonas sp. APM04]
ATGTCATTAGCTCGTATATATTCTCGTGCTCAGGTGGGTATTAATGCCCCTGAAGTTATTGTAGAGGTTCACTTAGGAAC
TGGTTTACCCGCATTCCACATTGTAGGCCTTCCCGAAGCCTCTGTTAAAGAGTCAAAAGACAGAGTGCGCAGCGCGCTTG
AAAACTCTCAATTTGGTTTTCCTGATCAACGTATTACTGTTAATTTAGCCCCAGCTGATTTACCCAAAGACGGTGGCCGG
TTTGATTTGGCCATTGCCGTAGGCATTTTGGTAGCATCAGGGCAAATAGTGTGCCCTGATATTCATAAATATGAGTTTTA
CGGTGAGCTTGCACTCAACGGTGAGGTACGTGGAGTAAATGCTATTTTGCCCTCTGTGCTTGCAGCTAAGGAACAAAACC
GCTGCTGTTTTTTACCCATAGCTAATGATAGCCTGGCAAGCCTTGTAAATGGCGTAAAGCGTAAAGCGGTAAGCTCTATT
CAAGAAGTATGGGGTGATTTACTAAACCAACAGCCGTTGCCGTTAAATATAGAGTATCCAGACTGTACGCAAGCACCTGA
CTTTTTACTCGATTTGAGCGACGTAAAAGGTCAACCCGGCGCTAAACGTGTATTAGAAATAGCTGCTGCAGGCGGGCACA
ATCTGCTATTTTTAGGTCCACCGGGAACCGGTAAATCAATGCTTGCTCAACGAATGGCCACAATAATGCCGGCTATGTCT
GATGATGAGGCACTTTCAACTGCCGCACTTTATTCAATTATTGGTCATTCAATCGATTTAACAAACTGGCGGCAACGCCC
TTTTCGTAATCCTCATCATACCTGCTCGGCGGTTGCATTAGTGGGGGGGTCATCAAACCCTAAGCCGGGTGAAATTTCGC
TGGCACACAATGGGGTATTATTTTTAGATGAGCTACCAGAGTTTGAGCGTAAAGTGCTCGACTCCCTTCGTGAGCCAATG
GAAACCGGTACGGTAACTATTTCGCGTGCGGCGCGGCAAATGGAGTTTCCTGCGCAGTTTCAGCTCATTACAGCGTTAAA
CCCAAGTCCTACGGGAAGCCATACCGATAAACGAGCAACACCCGATCAAGTTATACGTTATTTATCTCGTGTATCAGGCC
CATTTGTTGACCGTATTGATTTGCAAATAGAGCTACCACGGTTAACTAGCGTTGAACTGCAAAGCACTAAACAAGAAGAA
ACCAGCGCACAAGTGCGTGCACGGGTAGAAGCAGCTTATTACATACAGTTAAAACGCCAAGGCAAAGTGAATGCGCGGCT
AAATAATAAAGAAATGAGTATTCACTGTGAGCTTGCCCCAGCAGAGCTGCAGTTTTTAGCTAAGGCCAGTGAAAAGCTGT
CTTTATCGCCGCGCTCTTATCATAGAGTTATTAAAGTAGCGCGAACGATTAGTGATTTAAAAGGAAATGAAAAAATTAGC
TTAGACGATTTAAAAGAGGCATTAAATTACAGAGCCTTTGAGCGCTTAATTGCTCAACTTACTAAGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.357

100

0.556
  comM Haemophilus influenzae Rd KW20

53.937

100

0.546
  comM Vibrio campbellii strain DS40M4

53.77

100

0.54
  comM Glaesserella parasuis strain SC1401

53.36

100

0.538
  comM Legionella pneumophila str. Paris

50.503

99.004

0.5
  comM Legionella pneumophila strain ERS1305867

50.503

99.004

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.688

100

0.43

Multiple sequence alignment