Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IEQ11_RS01755 Genome accession   NZ_CP094357
Coordinates   435395..436918 (-) Length   507 a.a.
NCBI ID   WP_036114996.1    Uniprot ID   A0A120AGS7
Organism   Lysobacter capsici strain VKM B-2533     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 430395..441918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEQ11_RS01730 (IEQ11_01730) - 430859..431014 (-) 156 WP_187313323.1 hypothetical protein -
  IEQ11_RS01735 (IEQ11_01735) - 431145..431975 (-) 831 WP_191823604.1 helix-turn-helix transcriptional regulator -
  IEQ11_RS01740 (IEQ11_01740) - 432160..432573 (+) 414 WP_191823603.1 hypothetical protein -
  IEQ11_RS01745 (IEQ11_01745) - 432681..433778 (+) 1098 WP_191823602.1 GNAT family N-acetyltransferase -
  IEQ11_RS01750 (IEQ11_01750) - 433837..435240 (+) 1404 WP_191823601.1 FAD-binding oxidoreductase -
  IEQ11_RS01755 (IEQ11_01755) comM 435395..436918 (-) 1524 WP_036114996.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IEQ11_RS01760 (IEQ11_01760) - 436929..437195 (-) 267 WP_036114994.1 ubiquinone biosynthesis accessory factor UbiK -
  IEQ11_RS01765 (IEQ11_01765) - 437526..437864 (+) 339 WP_191823600.1 P-II family nitrogen regulator -
  IEQ11_RS01770 (IEQ11_01770) - 437976..438872 (-) 897 WP_191823599.1 LysR family transcriptional regulator -
  IEQ11_RS01775 (IEQ11_01775) - 439051..440043 (+) 993 WP_191823610.1 YeiH family putative sulfate export transporter -
  IEQ11_RS01780 (IEQ11_01780) - 440530..441810 (+) 1281 WP_046658766.1 M12 family metallo-peptidase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 53590.42 Da        Isoelectric Point: 8.5218

>NTDB_id=669208 IEQ11_RS01755 WP_036114996.1 435395..436918(-) (comM) [Lysobacter capsici strain VKM B-2533]
MNLALVHSRARSGVRAPAVRVEVHLAGGLPNMSIVGLPEAAVREAKDRVRAAIQCAQFEFPQRRITVNLAPADLPKDGGR
YDLAIALGILAASGQIPLEALNGCEFLGELGLTGELRAIDGVLPAALAAADAGHRLVVPAGNGAEAALAGRVEARTGRTL
LEVCAMLSGQKSLPEAVALPVVRVAGPDMLDVRGQAQARRALEIAAAGGHHLLLIGPPGCGKTLLASRLPGLLPEASEAE
ALETAAIASVSGGAHGRGLDPARWRERPFRSPHHTASAVALVGGGADPRPGEISLAHQGVLFLDELPEWERRALEVLREP
LESGVVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDSSGRCRCAGDAIRRYRARISGPLLDRIDLHIEVPRLPPSHLRP
DQPGGECSEAIRARVVLARQRQQARSGRINAQLSQAETSATCRLHERDHELLERAVESLQLSARSMHRILRVARTIADLA
GSEAIATAHLTEAIGYRRADRGLQSAA

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=669208 IEQ11_RS01755 WP_036114996.1 435395..436918(-) (comM) [Lysobacter capsici strain VKM B-2533]
ATGAATCTGGCACTCGTGCATAGCCGTGCGCGATCGGGCGTCCGTGCGCCCGCGGTGCGGGTCGAGGTCCATCTCGCCGG
CGGTTTGCCGAACATGTCGATCGTCGGCCTGCCCGAAGCGGCGGTGCGCGAAGCCAAGGACCGGGTGCGCGCGGCGATCC
AGTGCGCGCAGTTCGAATTCCCGCAGCGGCGCATCACCGTCAATCTGGCTCCGGCCGATCTGCCGAAGGACGGCGGCCGC
TACGACCTGGCAATCGCGCTCGGCATCCTCGCCGCGAGCGGACAGATTCCGCTGGAGGCCTTGAACGGTTGCGAGTTTCT
CGGCGAACTCGGCCTCACCGGCGAACTGCGCGCGATCGACGGCGTGCTGCCGGCGGCGCTGGCCGCGGCCGATGCCGGGC
ATCGGCTGGTGGTGCCGGCCGGCAACGGCGCCGAAGCCGCCCTCGCCGGCCGGGTCGAGGCGCGCACCGGCCGCACCTTG
CTGGAAGTGTGCGCGATGCTCAGCGGGCAAAAGTCTTTGCCCGAAGCCGTCGCCTTGCCGGTGGTGCGCGTCGCCGGGCC
GGACATGCTCGACGTGCGCGGCCAGGCGCAGGCGCGGCGCGCGCTCGAAATCGCCGCGGCCGGCGGCCACCATCTGCTGC
TGATCGGCCCGCCGGGCTGCGGCAAGACCTTGTTGGCCTCGCGTCTGCCCGGCCTGTTGCCCGAGGCCAGCGAAGCCGAA
GCCCTGGAAACCGCGGCGATCGCCTCGGTCAGCGGCGGCGCGCACGGGCGCGGACTCGATCCGGCGCGCTGGCGCGAGCG
CCCGTTCCGATCGCCGCACCACACCGCCAGCGCGGTCGCCCTGGTCGGCGGCGGCGCCGACCCGCGCCCCGGCGAAATCT
CCCTGGCCCATCAGGGCGTGCTGTTCCTCGACGAATTGCCCGAGTGGGAACGGCGCGCATTGGAAGTCCTGCGCGAACCA
CTGGAGTCGGGCGTGGTGACGGTGTCGCGCGCGGCGCGCAGCGCCGAGTTCCCGGCGCGGTTCCAGCTGGTCGCGGCGAT
GAACCCCTGCCCCTGCGGCTGGGCCGGCGACAGCAGCGGCCGCTGCCGTTGCGCCGGGGATGCCATCCGCCGTTACCGCG
CGCGCATTTCCGGTCCCTTGCTCGATCGCATCGACCTGCACATCGAGGTGCCGCGCCTGCCGCCCTCGCACCTGCGACCG
GACCAGCCCGGCGGCGAATGCTCCGAGGCCATCCGCGCCCGCGTCGTGCTGGCGCGGCAACGGCAGCAAGCGCGCAGCGG
CCGCATCAACGCCCAGCTCAGTCAGGCCGAGACCAGCGCGACCTGCCGCCTGCACGAACGCGATCACGAACTGCTCGAAC
GCGCGGTCGAAAGCCTGCAACTGTCTGCGCGCTCGATGCACCGGATCCTGCGCGTGGCCCGCACCATCGCCGATCTGGCC
GGCAGCGAGGCGATCGCCACCGCGCATCTGACCGAGGCGATCGGCTATCGGCGCGCCGATCGCGGGCTTCAATCGGCCGC
GTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A120AGS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.138

99.803

0.55
  comM Vibrio campbellii strain DS40M4

53.755

99.803

0.536
  comM Glaesserella parasuis strain SC1401

52.529

100

0.533
  comM Haemophilus influenzae Rd KW20

52.148

100

0.527
  comM Legionella pneumophila str. Paris

50.199

99.014

0.497
  comM Legionella pneumophila strain ERS1305867

50.199

99.014

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.508

100

0.46

Multiple sequence alignment