Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MRY17_RS25245 Genome accession   NZ_CP094351
Coordinates   5601891..5603387 (+) Length   498 a.a.
NCBI ID   WP_243353035.1    Uniprot ID   -
Organism   Pseudomonas orientalis strain YB-76     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5596891..5608387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRY17_RS25215 (MRY17_25215) - 5597255..5597950 (+) 696 WP_191956186.1 HAD-IA family hydrolase -
  MRY17_RS25220 (MRY17_25220) sutA 5598141..5598473 (-) 333 WP_169374915.1 transcriptional regulator SutA -
  MRY17_RS25225 (MRY17_25225) - 5598576..5599001 (-) 426 WP_181283389.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  MRY17_RS25230 (MRY17_25230) - 5599212..5600549 (-) 1338 WP_010207459.1 ammonium transporter -
  MRY17_RS25235 (MRY17_25235) glnK 5600585..5600923 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  MRY17_RS25240 (MRY17_25240) - 5601345..5601608 (+) 264 WP_003195432.1 accessory factor UbiK family protein -
  MRY17_RS25245 (MRY17_25245) comM 5601891..5603387 (+) 1497 WP_243353035.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MRY17_RS25250 (MRY17_25250) - 5603414..5605390 (-) 1977 WP_191952516.1 methyl-accepting chemotaxis protein -
  MRY17_RS25255 (MRY17_25255) - 5605569..5606489 (-) 921 WP_181283386.1 LysR substrate-binding domain-containing protein -
  MRY17_RS25260 (MRY17_25260) - 5606641..5608044 (+) 1404 WP_191952514.1 NorM family multidrug efflux MATE transporter -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53483.71 Da        Isoelectric Point: 8.0906

>NTDB_id=669204 MRY17_RS25245 WP_243353035.1 5601891..5603387(+) (comM) [Pseudomonas orientalis strain YB-76]
MSLAIVHSRAQVGVEAPVVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRTLMVPRANAEEACLASGLKVIAVDHL
LQAVAHLNGHVPIEPYRSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYMGEPSGRCRCTPEQVQRYRNKLSGPLLDRIDLHLTVAREATALSPAQQT
DDTTAKSAALVADARERQQRRQGCANAFLDLPGLREYCTLAKVDESWLENACERLTLSLRAAHRLLKVARTLADLEQKDA
IARHHLQEALQYRPAASS

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=669204 MRY17_RS25245 WP_243353035.1 5601891..5603387(+) (comM) [Pseudomonas orientalis strain YB-76]
ATGTCCCTCGCCATCGTCCACAGCCGCGCCCAGGTCGGCGTCGAAGCCCCCGTCGTCACTGTCGAAGTACACATGGCCAA
TGGGTTGCCGTCACTGACGCTGGTGGGCTTGCCGGAAACCGCGGTAAAGGAAAGCAAGGACCGCGTACGCAGCGCCATTC
TCAACTCGGCCCTGCAATACCCGGCGCGGCGCATCACGCTCAACCTGGCGCCAGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGATCTGGCGATTGCACTGGGAATCCTGGCGGCCAGCGTGCAAGTGCCGGCGTTGATGCTCGATGATGTCGAGTGCCT
CGGCGAGTTGGCGCTGTCCGGCGAGGTACGCGCGGTCAAAGGCGTGTTGCCGGCCGCTTTGGCGGCGCGCAAGGCCGGGC
GCACCTTGATGGTGCCCAGGGCAAACGCTGAAGAAGCGTGCCTGGCATCAGGATTGAAGGTGATTGCGGTGGACCACTTG
CTGCAGGCGGTGGCGCACTTGAATGGGCATGTGCCGATCGAGCCCTACCGGTCGGACGGCTTGCTGTATCTGAACAAACC
TTACCCGGACCTCAGTGAAGTCCAGGGCCAACTGGCAGCCAAGCGCGCCTTGCTGATCGCGGCGGCGGGGGCGCATAACC
TGCTGTTCAGCGGGCCGCCCGGCACCGGCAAGACGCTGCTCGCCAGCCGCCTGCCGGGGTTGCTGCCACCGCTCAGTGAG
CAGGAAGCGCTGGAGGTTGCGGCGATTCAATCCGTGGTCAGCCTGGCACCGTTGAGCCATTGGCCGCACCGGCCGTTTCG
CCAGCCGCACCATTCGGCATCCGGCCCTGCGCTGGTGGGTGGCGGGTCAAAGCCGCAACCAGGGGAGATTACGCTGGCCC
ATCACGGCGTGCTGTTCCTGGATGAGTTGCCGGAATTTGATCGCAAGGTGCTTGAGGTGCTGCGCGAGCCACTCGAATCA
GGGCATATCGTAATTTCCCGCGCCCGTGACCGAGTGAGTTTCCCGGCGCGCTTTCAACTGGTCGCCGCGATGAACCCTTG
CCCTTGCGGCTATATGGGCGAACCCAGCGGCCGTTGCCGGTGTACACCGGAACAGGTCCAGCGCTATCGCAACAAGCTTT
CCGGGCCGTTGCTGGACCGGATCGATCTGCACCTGACGGTGGCCCGGGAAGCCACGGCGCTGAGCCCGGCACAACAGACC
GATGACACCACCGCGAAATCGGCGGCGCTGGTGGCCGATGCGCGGGAACGCCAGCAACGACGCCAGGGCTGCGCCAACGC
ATTCCTCGACCTGCCGGGGCTGCGCGAATACTGCACGCTGGCGAAGGTCGATGAAAGTTGGCTGGAAAACGCCTGCGAGC
GGCTGACGCTTTCGTTGCGGGCGGCCCATCGCTTGCTCAAGGTGGCGCGTACACTGGCCGACCTGGAACAGAAAGACGCC
ATCGCTCGCCACCATCTGCAAGAGGCGTTGCAATACCGCCCGGCGGCGAGCTCTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.162

99.398

0.558
  comM Vibrio cholerae strain A1552

55.556

99.398

0.552
  comM Glaesserella parasuis strain SC1401

54.491

100

0.548
  comM Haemophilus influenzae Rd KW20

54

100

0.542
  comM Legionella pneumophila str. Paris

50.403

99.598

0.502
  comM Legionella pneumophila strain ERS1305867

50.403

99.598

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.957

100

0.468

Multiple sequence alignment