Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MRB47_RS18985 Genome accession   NZ_CP094346
Coordinates   4072907..4073449 (+) Length   180 a.a.
NCBI ID   WP_123675484.1    Uniprot ID   A0AAX1WWY6
Organism   Diaphorobacter sp. LI3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4067907..4078449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRB47_RS18975 (MRB47_18975) uvrA 4068211..4071300 (-) 3090 WP_196994775.1 excinuclease ABC subunit UvrA -
  MRB47_RS18980 (MRB47_18980) - 4071591..4072772 (+) 1182 WP_252102654.1 MFS transporter -
  MRB47_RS18985 (MRB47_18985) ssb 4072907..4073449 (+) 543 WP_123675484.1 single-stranded DNA-binding protein Machinery gene
  MRB47_RS18990 (MRB47_18990) - 4073557..4075218 (-) 1662 WP_220638183.1 L-lactate permease -
  MRB47_RS18995 (MRB47_18995) mnmA 4075456..4076568 (-) 1113 WP_252101480.1 tRNA 2-thiouridine(34) synthase MnmA -
  MRB47_RS19000 (MRB47_19000) - 4076717..4077691 (+) 975 WP_047349261.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19342.32 Da        Isoelectric Point: 5.9554

>NTDB_id=669158 MRB47_RS18985 WP_123675484.1 4072907..4073449(+) (ssb) [Diaphorobacter sp. LI3]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVRIATTDRWRDKNTGENKEATEWHSVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQSGQERYTTEIRADTMQMLGSRQGMGGGQGGGYDDSGYGDNGGGGGGYEAPRRAAPAPRPAPPAARPAPAP
VAQPPRAASGFDDMDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=669158 MRB47_RS18985 WP_123675484.1 4072907..4073449(+) (ssb) [Diaphorobacter sp. LI3]
ATGGCATCTGTGAACAAAGTCATCATCGTCGGCAACCTGGGGCGCGACCCCGAGATGCGCACCTTCCCCAGCGGCGACCA
GGTCGCCAACGTGCGCATCGCCACGACGGACCGCTGGCGCGACAAGAACACCGGCGAGAACAAGGAAGCCACCGAATGGC
ACAGCGTGGTCTTCAACGGCCGCCTGGCCGAGATCGTGGGCCAATATCTGCGCAAGGGCTCCCAGGTCTACGTGGAAGGC
AGCCTGCGCACCCGCAAATGGACCGACCAGAGCGGCCAGGAGCGCTACACCACCGAAATCCGCGCCGACACCATGCAGAT
GCTGGGCAGCCGCCAGGGCATGGGCGGCGGCCAGGGCGGCGGCTATGACGACAGCGGCTACGGCGACAACGGCGGCGGTG
GTGGCGGCTACGAGGCCCCGCGCCGCGCCGCACCCGCGCCGCGCCCCGCCCCCCCCGCGGCCCGCCCCGCCCCCGCGCCC
GTGGCGCAGCCGCCGCGCGCCGCATCGGGCTTTGACGACATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.604

100

0.561
  ssb Vibrio cholerae strain A1552

50.538

100

0.522
  ssb Neisseria gonorrhoeae MS11

45.556

100

0.456
  ssb Neisseria meningitidis MC58

44.199

100

0.444

Multiple sequence alignment