Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MRB47_RS00930 Genome accession   NZ_CP094346
Coordinates   204483..206021 (-) Length   512 a.a.
NCBI ID   WP_252101649.1    Uniprot ID   -
Organism   Diaphorobacter sp. LI3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 199483..211021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRB47_RS00915 (MRB47_00915) - 200755..201672 (-) 918 WP_252101646.1 LysR family transcriptional regulator -
  MRB47_RS00920 (MRB47_00920) - 201781..202590 (+) 810 WP_252101647.1 SDR family NAD(P)-dependent oxidoreductase -
  MRB47_RS00925 (MRB47_00925) - 202713..204437 (-) 1725 WP_252101648.1 methyl-accepting chemotaxis protein -
  MRB47_RS00930 (MRB47_00930) comM 204483..206021 (-) 1539 WP_252101649.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MRB47_RS00935 (MRB47_00935) - 206241..206972 (+) 732 WP_172205344.1 TorF family putative porin -
  MRB47_RS00940 (MRB47_00940) glnK 206993..207331 (+) 339 WP_011803632.1 P-II family nitrogen regulator -
  MRB47_RS00945 (MRB47_00945) - 207378..208805 (+) 1428 WP_252101650.1 ammonium transporter -
  MRB47_RS00950 (MRB47_00950) - 208945..209895 (+) 951 WP_252101651.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 53626.43 Da        Isoelectric Point: 7.5333

>NTDB_id=669138 MRB47_RS00930 WP_252101649.1 204483..206021(-) (comM) [Diaphorobacter sp. LI3]
MSLALVQSRALLGLHAPAVTVEVHLANGLPSFALVGLADVEVKEARERVRSALQNAGLEFPANKKITVNLAPADLPKDSG
RFDLPIALGILAASGQIDAARLDGWEFAGELSLSGLLRPVRGALATSLALRALAQPVRTVLPPGSAEEAALVPGTEIYRA
HHLLDVVRQFVPVPPPNDDGADDGGWQRLQPAPPAPATDGPDLADVKGQAAAKRALEIAAAGGHGLLLVGPPGSGKSMLA
QRFAGLLPPMGVEQALESAAIASLAGRFSPAQWMQRTTASPHHSCSAIALVGGGSPPRPGEISLAHEGVLFLDEFPEFAR
SALEALREPLESGRITIARAAQRAEFPARFQLVAAMNPCPCGFAGSHQRACRCTPDQIARYQGKLSGPLLDRIDLHVEVP
ALPPEELLGAPPGEPSGAVRERVARAHERALQRQGKANQALQGQELEQMAALDAPAARFLQAAAARLAWSARSTHRALKV
ARTIADLSGCETVGAAHVAEAVQYRRALRALA

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=669138 MRB47_RS00930 WP_252101649.1 204483..206021(-) (comM) [Diaphorobacter sp. LI3]
ATGAGTCTTGCTTTGGTGCAAAGCCGCGCCCTGCTGGGCCTGCACGCGCCCGCCGTTACGGTGGAAGTACACCTGGCCAA
CGGGTTGCCCAGCTTCGCGCTGGTGGGCCTGGCCGATGTCGAGGTCAAGGAGGCGCGCGAGCGCGTGCGCTCCGCGCTGC
AGAACGCCGGGCTGGAATTCCCGGCCAACAAGAAGATCACCGTGAACCTGGCGCCGGCCGATCTGCCCAAAGACTCCGGC
CGCTTCGACCTGCCGATCGCGCTGGGCATCCTGGCCGCGAGCGGGCAGATCGACGCGGCCCGGTTGGACGGCTGGGAGTT
CGCCGGCGAGCTATCGCTGTCGGGCCTGCTGCGCCCGGTGCGCGGCGCCCTGGCGACCAGCTTGGCGCTGCGCGCGCTGG
CGCAGCCCGTACGCACGGTGCTTCCCCCCGGCAGCGCCGAAGAAGCTGCGCTGGTGCCGGGCACCGAGATCTACCGCGCG
CACCACCTGTTGGACGTGGTACGCCAGTTCGTGCCCGTGCCCCCGCCGAACGATGATGGCGCGGACGACGGCGGTTGGCA
GCGGCTGCAACCCGCGCCGCCGGCCCCGGCCACCGATGGCCCGGACCTGGCCGACGTGAAGGGGCAGGCCGCGGCCAAGC
GCGCACTGGAGATCGCTGCCGCAGGCGGGCACGGGCTGCTGCTCGTGGGGCCCCCGGGCTCGGGCAAGTCCATGCTGGCC
CAGCGTTTTGCCGGGCTGCTGCCCCCGATGGGGGTGGAGCAAGCGCTGGAGAGCGCGGCCATTGCCAGCCTGGCCGGGCG
CTTCAGCCCCGCACAGTGGATGCAGCGCACCACAGCCAGCCCGCACCACAGCTGCAGCGCGATCGCGCTGGTGGGCGGGG
GCTCGCCGCCGCGCCCGGGCGAGATCTCGCTCGCGCACGAGGGCGTGCTGTTCCTCGATGAATTCCCCGAATTCGCCCGC
AGCGCCCTGGAGGCCCTGCGCGAGCCGCTGGAGAGCGGGCGCATCACCATTGCCCGGGCGGCGCAGCGCGCCGAGTTCCC
GGCGCGCTTTCAGCTCGTGGCGGCCATGAACCCCTGCCCCTGTGGTTTTGCGGGCTCGCACCAGCGCGCCTGCCGCTGCA
CACCCGACCAGATCGCGCGCTACCAGGGCAAGCTCAGCGGCCCGCTGCTGGACCGCATCGACCTGCATGTGGAGGTGCCC
GCGCTGCCGCCCGAGGAACTGCTGGGCGCCCCGCCCGGCGAACCCAGCGGCGCCGTGCGCGAACGCGTGGCCCGCGCGCA
CGAACGAGCGCTCCAGCGCCAGGGCAAGGCCAACCAGGCATTGCAGGGTCAGGAGCTGGAACAGATGGCGGCGCTGGACG
CGCCGGCCGCGCGGTTCCTGCAGGCTGCGGCGGCGCGCCTGGCGTGGTCGGCGCGCAGCACGCACCGGGCCCTCAAGGTT
GCACGTACTATTGCCGATCTATCGGGCTGCGAGACCGTGGGCGCCGCCCATGTGGCCGAAGCCGTGCAATACCGGCGCGC
CCTGCGCGCACTGGCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-406)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(413-505)

Subunit ChlI of Mg-chelatase (ChlI)

(21-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.124

100

0.527
  comM Haemophilus influenzae Rd KW20

50.766

100

0.518
  comM Vibrio campbellii strain DS40M4

50.484

100

0.51
  comM Glaesserella parasuis strain SC1401

49.903

100

0.502
  comM Legionella pneumophila str. Paris

48.538

100

0.486
  comM Legionella pneumophila strain ERS1305867

48.538

100

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.164

100

0.432

Multiple sequence alignment